Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | AAVD18_RS08315 | Genome accession | NZ_CP154893 |
| Coordinates | 1585838..1586875 (-) | Length | 345 a.a. |
| NCBI ID | WP_013352871.1 | Uniprot ID | A0A9P1JIA4 |
| Organism | Bacillus amyloliquefaciens strain Fad 11/2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1580838..1591875
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAVD18_RS08265 (AAVD18_08265) | - | 1581074..1581859 (-) | 786 | WP_013352862.1 | TasA family protein | - |
| AAVD18_RS08270 (AAVD18_08270) | - | 1581924..1582508 (-) | 585 | WP_013352863.1 | signal peptidase I | - |
| AAVD18_RS08275 (AAVD18_08275) | tapA | 1582480..1583151 (-) | 672 | WP_013352864.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AAVD18_RS08280 (AAVD18_08280) | - | 1583409..1583738 (+) | 330 | WP_013352865.1 | DUF3889 domain-containing protein | - |
| AAVD18_RS08285 (AAVD18_08285) | - | 1583779..1583958 (-) | 180 | WP_013352866.1 | YqzE family protein | - |
| AAVD18_RS08290 (AAVD18_08290) | comGG | 1584012..1584389 (-) | 378 | WP_013352867.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AAVD18_RS08295 (AAVD18_08295) | comGF | 1584391..1584891 (-) | 501 | WP_013352868.1 | competence type IV pilus minor pilin ComGF | - |
| AAVD18_RS08300 (AAVD18_08300) | comGE | 1584800..1585114 (-) | 315 | WP_014470662.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| AAVD18_RS08305 (AAVD18_08305) | comGD | 1585098..1585535 (-) | 438 | WP_013352869.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AAVD18_RS08310 (AAVD18_08310) | comGC | 1585525..1585833 (-) | 309 | WP_013352870.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AAVD18_RS08315 (AAVD18_08315) | comGB | 1585838..1586875 (-) | 1038 | WP_013352871.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AAVD18_RS08320 (AAVD18_08320) | comGA | 1586862..1587932 (-) | 1071 | WP_013352872.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AAVD18_RS08325 (AAVD18_08325) | - | 1588126..1589076 (-) | 951 | WP_013352873.1 | magnesium transporter CorA family protein | - |
| AAVD18_RS08330 (AAVD18_08330) | - | 1589223..1590524 (+) | 1302 | WP_013352874.1 | hemolysin family protein | - |
| AAVD18_RS08335 (AAVD18_08335) | - | 1590562..1591389 (-) | 828 | WP_061573780.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39644.94 Da Isoelectric Point: 9.4989
>NTDB_id=994699 AAVD18_RS08315 WP_013352871.1 1585838..1586875(-) (comGB) [Bacillus amyloliquefaciens strain Fad 11/2]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDSFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLICSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
QHFHEACALGMSAVLSLFLYVWFLCKKKSPQDKMLIVVKIPLIGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAEKYTGILQPVIY
GVVAGMILLVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDSFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLICSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
QHFHEACALGMSAVLSLFLYVWFLCKKKSPQDKMLIVVKIPLIGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAEKYTGILQPVIY
GVVAGMILLVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=994699 AAVD18_RS08315 WP_013352871.1 1585838..1586875(-) (comGB) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGAAGCGGATTAAAAGAACCTGGCCGTTGAAGGACCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGCCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATTC
GCCGGCTGAGAGAAGGCGATTCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCGATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATGTTCCGTCTGCGTCATGTTTTATATCCTGCAAAGTTTGA
TTATTCCGCAGTTTTCAGGGATTTATCAATCAATGAATATGAATACTTCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CAGCATTTTCATGAAGCCTGCGCACTGGGGATGTCAGCCGTTCTCAGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGACAAGATGCTTATCGTTGTGAAAATCCCCCTGATAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGTCTTTCTATCTATGACAGCTTAACTGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTACCGTGAAGAAGCAGAGATGCTCATTACACGTTTGAAGGCCGGTGAAACTATAGAATCTGCTCTTTC
CGGCCATCCGTGTTATGAAAAAGATCTTGCGGCTGCAGTCAGTCACGGACAGGCAAACGGCCGGCTTCATCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAATGCGGAGAAGTATACCGGTATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTACTTGTGTATATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAAAGAACCTGGCCGTTGAAGGACCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGCCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATTC
GCCGGCTGAGAGAAGGCGATTCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCGATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATGTTCCGTCTGCGTCATGTTTTATATCCTGCAAAGTTTGA
TTATTCCGCAGTTTTCAGGGATTTATCAATCAATGAATATGAATACTTCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CAGCATTTTCATGAAGCCTGCGCACTGGGGATGTCAGCCGTTCTCAGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGACAAGATGCTTATCGTTGTGAAAATCCCCCTGATAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGTCTTTCTATCTATGACAGCTTAACTGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTACCGTGAAGAAGCAGAGATGCTCATTACACGTTTGAAGGCCGGTGAAACTATAGAATCTGCTCTTTC
CGGCCATCCGTGTTATGAAAAAGATCTTGCGGCTGCAGTCAGTCACGGACAGGCAAACGGCCGGCTTCATCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAATGCGGAGAAGTATACCGGTATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTACTTGTGTATATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
66.873 |
93.623 |
0.626 |