Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AAVD18_RS03120 Genome accession   NZ_CP154893
Coordinates   558632..559228 (+) Length   198 a.a.
NCBI ID   WP_013352088.1    Uniprot ID   A0A9P1JH25
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 553632..564228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS03085 (AAVD18_03085) - 553671..554126 (+) 456 WP_013352081.1 flavodoxin -
  AAVD18_RS03090 (AAVD18_03090) dapD 554208..554918 (+) 711 WP_013352082.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AAVD18_RS03095 (AAVD18_03095) - 554989..556113 (+) 1125 WP_013352083.1 N-acetyldiaminopimelate deacetylase -
  AAVD18_RS03100 (AAVD18_03100) - 556174..556419 (+) 246 WP_013352084.1 YkuS family protein -
  AAVD18_RS03105 (AAVD18_03105) - 556453..557259 (-) 807 WP_013352085.1 mechanosensitive ion channel family protein -
  AAVD18_RS03110 (AAVD18_03110) - 557479..557694 (+) 216 WP_014470458.1 hypothetical protein -
  AAVD18_RS03115 (AAVD18_03115) - 557709..558167 (+) 459 WP_014470457.1 redoxin domain-containing protein -
  AAVD18_RS03120 (AAVD18_03120) rok 558632..559228 (+) 597 WP_013352088.1 transcriptional regulator Rok Regulator
  AAVD18_RS03125 (AAVD18_03125) - 559249..560241 (-) 993 WP_013352089.1 hypothetical protein -
  AAVD18_RS03130 (AAVD18_03130) - 560388..560990 (+) 603 WP_013352090.1 molybdenum cofactor guanylyltransferase -
  AAVD18_RS03135 (AAVD18_03135) - 561043..562062 (+) 1020 WP_013352091.1 molybdopterin-synthase adenylyltransferase MoeB -
  AAVD18_RS03140 (AAVD18_03140) glp 562080..563372 (+) 1293 WP_013352092.1 gephyrin-like molybdotransferase Glp -
  AAVD18_RS03145 (AAVD18_03145) mobB 563333..563854 (+) 522 WP_014471749.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22539.60 Da        Isoelectric Point: 9.6909

>NTDB_id=994683 AAVD18_RS03120 WP_013352088.1 558632..559228(+) (rok) [Bacillus amyloliquefaciens strain Fad 11/2]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSTQPQMQSITTLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETGNDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=994683 AAVD18_RS03120 WP_013352088.1 558632..559228(+) (rok) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCAGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTACCAAAAGCCGCAG
ACACAGCCTCAATCCACCCAGCCGCAAATGCAGTCTATTACGACTCTTCCAGCCGGCATTCCAGACGGTTCTACTAGAAG
AAGAAGAGGGACGGCAAGACCGGGTTCAAAGGCGGCAAAACTGCGCGAAGCAGCCATTAAAACATTGAAACGCCACAATG
CAGCAATCAAAAGTTCAGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACCTTTATG
CAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGGAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.052

97.98

0.833

Multiple sequence alignment