Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   AAFU62_RS00335 Genome accession   NZ_CP154891
Coordinates   54236..54334 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 318231     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49236..59334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFU62_RS00320 (AAFU62_00320) - 50097..51794 (+) 1698 WP_136268453.1 AIPR family protein -
  AAFU62_RS00325 (AAFU62_00325) purB 51812..53104 (+) 1293 WP_129321630.1 adenylosuccinate lyase -
  AAFU62_RS00330 (AAFU62_00330) comR 53234..54145 (+) 912 WP_136268451.1 XRE family transcriptional regulator Regulator
  AAFU62_RS00335 (AAFU62_00335) comS 54236..54334 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  AAFU62_RS00340 (AAFU62_00340) ruvB 54365..55363 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  AAFU62_RS00345 (AAFU62_00345) - 55501..55938 (+) 438 WP_111689441.1 low molecular weight protein-tyrosine-phosphatase -
  AAFU62_RS00350 (AAFU62_00350) - 55961..56362 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  AAFU62_RS00355 (AAFU62_00355) - 56359..58134 (+) 1776 WP_053308140.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=994620 AAFU62_RS00335 WP_020833188.1 54236..54334(+) (comS) [Streptococcus pyogenes strain 318231]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=994620 AAFU62_RS00335 WP_020833188.1 54236..54334(+) (comS) [Streptococcus pyogenes strain 318231]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment