Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EW022_RS02205 Genome accession   NZ_LR130240
Coordinates   420895..421929 (+) Length   344 a.a.
NCBI ID   WP_011285080.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain PS006 isolate PS006     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 415895..426929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW022_RS02175 tsaE 416960..417421 (+) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  EW022_RS02180 - 417396..417920 (+) 525 WP_011285082.1 GNAT family N-acetyltransferase -
  EW022_RS02185 brpA 417929..419212 (+) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  EW022_RS02190 - 419323..419679 (-) 357 WP_002988657.1 hypothetical protein -
  EW022_RS02195 - 419676..420095 (-) 420 WP_011285081.1 HIT family protein -
  EW022_RS02200 pptA 420167..420892 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  EW022_RS02205 pptB 420895..421929 (+) 1035 WP_011285080.1 ABC transporter permease Regulator
  EW022_RS02210 ccrZ 421993..422784 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  EW022_RS02215 trmB 422784..423419 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EW022_RS02225 rimP 423678..424214 (+) 537 WP_002988815.1 ribosome maturation factor RimP -
  EW022_RS02230 nusA 424389..425546 (+) 1158 WP_002983485.1 transcription termination factor NusA -
  EW022_RS02235 rnpM 425562..425858 (+) 297 WP_002983486.1 RNase P modulator RnpM -
  EW022_RS02240 - 425851..426153 (+) 303 WP_011285079.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40272.48 Da        Isoelectric Point: 10.3422

>NTDB_id=994502 EW022_RS02205 WP_011285080.1 420895..421929(+) (pptB) [Streptococcus pyogenes strain PS006 isolate PS006]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGYAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAILLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=994502 EW022_RS02205 WP_011285080.1 420895..421929(+) (pptB) [Streptococcus pyogenes strain PS006 isolate PS006]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTATGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAACGACTTTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTATATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427