Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   AAYT22_RS08820 Genome accession   NZ_CP154876
Coordinates   1715970..1717007 (-) Length   345 a.a.
NCBI ID   WP_000727277.1    Uniprot ID   A0A0B7LHQ0
Organism   Streptococcus pneumoniae strain 20155336     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1710970..1722007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYT22_RS08795 (AAYT22_08785) - 1711709..1713040 (-) 1332 WP_000390043.1 hemolysin family protein -
  AAYT22_RS08800 (AAYT22_08790) endA 1713331..1714155 (-) 825 WP_001036776.1 DNA-entry nuclease EndA Machinery gene
  AAYT22_RS08805 (AAYT22_08795) - 1714194..1714382 (-) 189 WP_001812859.1 DNA-directed RNA polymerase subunit beta -
  AAYT22_RS08810 (AAYT22_08800) murA 1714375..1715658 (-) 1284 WP_000358028.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AAYT22_RS08815 (AAYT22_08805) - 1715682..1715912 (-) 231 WP_000250383.1 DUF1146 family protein -
  AAYT22_RS08820 (AAYT22_08810) sepM 1715970..1717007 (-) 1038 WP_000727277.1 SepM family pheromone-processing serine protease Regulator
  AAYT22_RS08825 (AAYT22_08815) coaD 1716991..1717479 (-) 489 WP_001280723.1 pantetheine-phosphate adenylyltransferase -
  AAYT22_RS08830 (AAYT22_08820) rsmD 1717469..1718008 (-) 540 WP_000706950.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAYT22_RS08835 (AAYT22_08825) asnA 1718073..1719065 (-) 993 WP_000747993.1 aspartate--ammonia ligase -
  AAYT22_RS08840 (AAYT22_08830) - 1719177..1719860 (-) 684 WP_001016917.1 Bax inhibitor-1/YccA family protein -
  AAYT22_RS08845 (AAYT22_08835) - 1719916..1720656 (-) 741 WP_000152680.1 TrmH family RNA methyltransferase -
  AAYT22_RS08850 (AAYT22_08840) - 1720690..1720968 (+) 279 WP_001174613.1 acylphosphatase -
  AAYT22_RS08855 (AAYT22_08845) yidC 1721046..1721972 (+) 927 WP_000835949.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37537.57 Da        Isoelectric Point: 5.0724

>NTDB_id=994397 AAYT22_RS08820 WP_000727277.1 1715970..1717007(-) (sepM) [Streptococcus pneumoniae strain 20155336]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=994397 AAYT22_RS08820 WP_000727277.1 1715970..1717007(-) (sepM) [Streptococcus pneumoniae strain 20155336]
ATGAAAAAAAAGATTAGATGGCCCTTATACGTCATTGCGGCCTTGATTGTGACTTTCTTGGCATTTGTAGTGCCCTTGCC
TTATTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCCACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACGGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGATTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAAATCATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGGCTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGTCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0B7LHQ0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.649

99.13

0.591


Multiple sequence alignment