Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   V6C35_RS07705 Genome accession   NZ_CP154863
Coordinates   1600997..1601971 (-) Length   324 a.a.
NCBI ID   WP_334212660.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN31-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1595997..1606971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C35_RS07665 (V6C35_007665) gcvT 1596498..1597589 (-) 1092 WP_196755283.1 glycine cleavage system aminomethyltransferase GcvT -
  V6C35_RS07670 (V6C35_007670) - 1597748..1598272 (-) 525 WP_188352559.1 shikimate kinase -
  V6C35_RS07675 (V6C35_007675) - 1598262..1598408 (-) 147 WP_001792109.1 hypothetical protein -
  V6C35_RS07680 (V6C35_007680) comGF 1598505..1599002 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6C35_RS07685 (V6C35_007685) comGE 1598920..1599219 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  V6C35_RS07690 (V6C35_007690) comGD 1599206..1599652 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  V6C35_RS07695 (V6C35_007695) comGC 1599630..1599941 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  V6C35_RS07700 (V6C35_007700) comGB 1599955..1601025 (-) 1071 WP_031765079.1 competence type IV pilus assembly protein ComGB Machinery gene
  V6C35_RS07705 (V6C35_007705) comGA 1600997..1601971 (-) 975 WP_334212660.1 competence type IV pilus ATPase ComGA Machinery gene
  V6C35_RS07710 (V6C35_007710) - 1602023..1602646 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  V6C35_RS07715 (V6C35_007715) - 1602643..1602972 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  V6C35_RS07720 (V6C35_007720) - 1602972..1603958 (-) 987 WP_000161314.1 ROK family glucokinase -
  V6C35_RS07725 (V6C35_007725) - 1603955..1604158 (-) 204 WP_000087561.1 YqgQ family protein -
  V6C35_RS07730 (V6C35_007730) - 1604139..1605602 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  V6C35_RS07735 (V6C35_007735) - 1605614..1606153 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  V6C35_RS07740 (V6C35_007740) rpmG 1606362..1606511 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37027.12 Da        Isoelectric Point: 8.8516

>NTDB_id=994268 V6C35_RS07705 WP_334212660.1 1600997..1601971(-) (comGA) [Staphylococcus aureus strain BSN31-2]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIWNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=994268 V6C35_RS07705 WP_334212660.1 1600997..1601971(-) (comGA) [Staphylococcus aureus strain BSN31-2]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTTGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGCGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997

Multiple sequence alignment