Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   V6C35_RS07690 Genome accession   NZ_CP154863
Coordinates   1599206..1599652 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN31-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594206..1604652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C35_RS07660 (V6C35_007660) gcvPA 1595132..1596478 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  V6C35_RS07665 (V6C35_007665) gcvT 1596498..1597589 (-) 1092 WP_196755283.1 glycine cleavage system aminomethyltransferase GcvT -
  V6C35_RS07670 (V6C35_007670) - 1597748..1598272 (-) 525 WP_188352559.1 shikimate kinase -
  V6C35_RS07675 (V6C35_007675) - 1598262..1598408 (-) 147 WP_001792109.1 hypothetical protein -
  V6C35_RS07680 (V6C35_007680) comGF 1598505..1599002 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6C35_RS07685 (V6C35_007685) comGE 1598920..1599219 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  V6C35_RS07690 (V6C35_007690) comGD 1599206..1599652 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  V6C35_RS07695 (V6C35_007695) comGC 1599630..1599941 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  V6C35_RS07700 (V6C35_007700) comGB 1599955..1601025 (-) 1071 WP_031765079.1 competence type IV pilus assembly protein ComGB Machinery gene
  V6C35_RS07705 (V6C35_007705) comGA 1600997..1601971 (-) 975 WP_334212660.1 competence type IV pilus ATPase ComGA Machinery gene
  V6C35_RS07710 (V6C35_007710) - 1602023..1602646 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  V6C35_RS07715 (V6C35_007715) - 1602643..1602972 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  V6C35_RS07720 (V6C35_007720) - 1602972..1603958 (-) 987 WP_000161314.1 ROK family glucokinase -
  V6C35_RS07725 (V6C35_007725) - 1603955..1604158 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=994265 V6C35_RS07690 WP_001788899.1 1599206..1599652(-) (comGD) [Staphylococcus aureus strain BSN31-2]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=994265 V6C35_RS07690 WP_001788899.1 1599206..1599652(-) (comGD) [Staphylococcus aureus strain BSN31-2]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment