Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMG15_RS00275 Genome accession   NZ_AP027055
Coordinates   65871..67247 (+) Length   458 a.a.
NCBI ID   WP_281788980.1    Uniprot ID   -
Organism   Limnohabitans sp. INBF002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 60871..72247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG15_RS00250 (LINBF2_00500) - 61073..62032 (-) 960 WP_281788975.1 DMT family transporter -
  QMG15_RS00255 (LINBF2_00510) lplT 62036..63343 (-) 1308 WP_281788976.1 lysophospholipid transporter LplT -
  QMG15_RS00260 (LINBF2_00520) alr 63443..64549 (+) 1107 WP_281788977.1 alanine racemase -
  QMG15_RS00265 (LINBF2_00530) - 64558..65370 (-) 813 WP_281788978.1 aldolase/citrate lyase family protein -
  QMG15_RS00270 (LINBF2_00540) - 65383..65787 (-) 405 WP_281788979.1 5-carboxymethyl-2-hydroxymuconate isomerase -
  QMG15_RS00275 (LINBF2_00550) radA 65871..67247 (+) 1377 WP_281788980.1 DNA repair protein RadA Machinery gene
  QMG15_RS00280 (LINBF2_00560) - 67252..68814 (-) 1563 WP_281788981.1 DUF5666 domain-containing protein -
  QMG15_RS00285 (LINBF2_00570) - 68946..69326 (+) 381 WP_281788982.1 DUF1924 domain-containing protein -
  QMG15_RS00290 (LINBF2_00580) - 69338..69808 (+) 471 WP_281788983.1 diheme cytochrome c -
  QMG15_RS00295 (LINBF2_00590) - 69805..70419 (+) 615 WP_281788984.1 cytochrome b/b6 domain-containing protein -
  QMG15_RS00300 (LINBF2_00600) - 70394..71050 (+) 657 WP_108359536.1 winged helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48207.53 Da        Isoelectric Point: 6.7595

>NTDB_id=99405 QMG15_RS00275 WP_281788980.1 65871..67247(+) (radA) [Limnohabitans sp. INBF002]
MAKEKTQYTCTDCGGITAKWLGKCPSCNAWNTLIETAVDSSGPTKNRYAGMAALAPASEVAVLSDIEAQDVARTPTGQEE
LDRVLGGGMVEGGVVLIGGDPGIGKSTLILQAMDGLQRSGMSTLYVTGEESAAQVALRSRRLGLDHSQVQVLAETQLEKI
LATVDKLQPAVVVMDSIQTVYSDQLTSAPGSVAQVRECASHLTRMAKSSGTAVVLVGHVTKEGALAGPRVLEHMVDTVLY
FEGDTHSTYRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDSGG
PSPRRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVLLSIQSSLRGKPLPQGFIAFGEVGLA
GEVRPAPRGQERLKEAAKLGFTVAVIPKANAPKKPIPGMTVHAVERVDEAIGLVRELG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=99405 QMG15_RS00275 WP_281788980.1 65871..67247(+) (radA) [Limnohabitans sp. INBF002]
ATGGCCAAAGAAAAAACCCAATACACCTGCACCGACTGCGGCGGCATCACTGCCAAATGGTTGGGCAAATGCCCCAGTTG
CAACGCGTGGAACACGCTGATTGAAACGGCGGTCGATAGCAGCGGCCCCACCAAAAACCGTTACGCGGGCATGGCGGCCT
TGGCCCCAGCTTCAGAAGTGGCGGTGCTCTCCGACATCGAAGCACAAGACGTGGCGCGCACGCCCACGGGTCAAGAAGAA
CTCGACCGCGTGTTGGGCGGCGGCATGGTCGAGGGCGGTGTGGTGCTGATTGGTGGCGACCCCGGCATTGGCAAATCCAC
GTTGATTTTGCAAGCCATGGACGGCCTGCAACGCAGCGGCATGAGCACCTTGTATGTGACGGGCGAAGAGTCTGCCGCGC
AAGTGGCCTTGCGCTCGCGCCGCTTGGGGCTGGACCACAGCCAAGTGCAAGTGCTGGCTGAAACTCAGCTTGAAAAAATA
TTGGCCACCGTCGACAAGCTTCAACCGGCGGTGGTGGTGATGGACTCCATCCAAACCGTTTATTCCGATCAACTCACCAG
TGCCCCCGGCTCGGTGGCGCAAGTGCGCGAGTGCGCGTCACACCTCACCCGCATGGCCAAGTCTTCGGGCACCGCTGTGG
TGTTGGTGGGCCATGTCACCAAAGAGGGCGCACTGGCTGGGCCGCGTGTGTTGGAGCACATGGTGGACACGGTGCTGTAC
TTTGAAGGCGACACACATTCGACTTACCGACTTGTGCGTGCCATCAAAAACCGCTTTGGTGCAGTCAACGAAATTGGCGT
CTTCGCGATGACCGAAAAAGGCTTGAAGGGCGTGAGTAACCCCAGCGCCATTTTCTTGAGCCAACACTCCGAGCCGGTGC
CCGGCAGTTGTGTGTTGGTCACGCTTGAAGGCACACGCCCCATGCTCGTGGAGATTCAAGCCTTGGTCGACAGCGGTGGC
CCATCACCACGCCGCCTGAGCGTGGGCTTGGACCGCGACCGTTTGGCCATGTTGCTGGCCGTGTTGCATCGCCATGCAGG
TGTGGCGTGCATGGACCAAGATGTGTTTGTCAATGCCGTGGGCGGTGTGCGCATCAGCGAGCCCGCAGCAGACTTGGCGG
TGTTGTTGTCGATTCAAAGCAGCTTGCGTGGCAAACCTTTGCCCCAAGGCTTCATCGCCTTTGGCGAAGTGGGTTTGGCA
GGTGAAGTGCGCCCCGCACCGCGTGGGCAAGAGCGCTTGAAAGAAGCGGCCAAACTCGGCTTTACCGTCGCCGTCATCCC
CAAAGCCAATGCACCCAAAAAGCCCATCCCCGGCATGACCGTGCATGCGGTCGAGCGGGTGGATGAGGCGATTGGCTTGG
TGCGGGAGCTGGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.786

98.908

0.483
  radA Streptococcus mitis NCTC 12261

45.354

98.69

0.448
  radA Streptococcus mitis SK321

45.843

97.162

0.445
  radA Streptococcus pneumoniae TIGR4

46.154

96.507

0.445
  radA Streptococcus pneumoniae R6

46.154

96.507

0.445
  radA Streptococcus pneumoniae Rx1

46.154

96.507

0.445
  radA Streptococcus pneumoniae D39

46.154

96.507

0.445

Multiple sequence alignment