Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   H346_RS0102545 Genome accession   NZ_AUKZ01000006
Coordinates   32713..33807 (-) Length   364 a.a.
NCBI ID   WP_027969703.1    Uniprot ID   -
Organism   Streptococcus castoreus DSM 17536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27713..38807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H346_RS0102530 trpS 28812..29834 (+) 1023 WP_027969700.1 tryptophan--tRNA ligase -
  H346_RS0102535 guaB 30049..31530 (+) 1482 WP_027969701.1 IMP dehydrogenase -
  H346_RS0102540 - 31750..32613 (+) 864 WP_027969702.1 GRP family sugar transporter -
  H346_RS0102545 recF 32713..33807 (-) 1095 WP_027969703.1 DNA replication/repair protein RecF Machinery gene
  H346_RS0102550 yaaA 33809..34219 (-) 411 WP_027969704.1 S4 domain-containing protein YaaA -
  H346_RS0102555 yfmF 34524..35768 (+) 1245 WP_027969705.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  H346_RS0102560 yfmH 35770..37053 (+) 1284 WP_027969706.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  H346_RS0102565 - 37102..38118 (+) 1017 WP_027969707.1 helix-turn-helix domain-containing protein -
  H346_RS0102570 pgsA 38131..38673 (+) 543 WP_027969708.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41851.90 Da        Isoelectric Point: 8.9115

>NTDB_id=99399 H346_RS0102545 WP_027969703.1 32713..33807(-) (recF) [Streptococcus castoreus DSM 17536]
MWIKELQLKHYRNYNQLSAKFSSGLNVFIGDNAQGKTNFLEAIYFLSLTRSHRTRSDKELIHFEEKNVFLSGKVHRTSGI
IDLEISLSDKGRITKINALRQTKLSDYIGTMMVVLFAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLSYLSNYNHILKQR
NTYLKSAKQIDATFLAVLDEQLAHYGSRVIEDRMGFIEALEKEANAHHQAISNGLENLTLSYQSSVHFEEKSDVYQNFLE
QLKKNHQKDFFRKNTSVGPHRDDLVFYINEMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETIIKENVQTFITTTSLEHLSQLPEDIRIFHVTKGTIKVN

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=99399 H346_RS0102545 WP_027969703.1 32713..33807(-) (recF) [Streptococcus castoreus DSM 17536]
ATGTGGATTAAAGAATTACAGCTTAAACACTACCGTAATTACAACCAACTATCCGCAAAATTTTCGTCTGGCTTAAATGT
TTTTATTGGCGATAATGCTCAAGGAAAAACCAATTTCCTTGAAGCTATTTATTTTTTATCACTAACTAGAAGTCACCGTA
CAAGATCTGATAAAGAGCTGATTCATTTTGAGGAAAAAAATGTTTTCCTTTCTGGTAAAGTCCATCGTACTAGCGGTATA
ATTGATTTGGAAATTAGTCTATCGGACAAGGGACGTATTACCAAAATCAATGCCTTGAGACAAACTAAACTTTCTGACTA
TATTGGTACCATGATGGTTGTTCTTTTTGCCCCAGAAGATTTACAGCTAATCAAAGGCGCCCCTAGCCTAAGACGAAAAT
TCATTGATATTGATTTGGGACAGATTAAGCCCATCTATTTGTCCTACTTATCCAATTACAACCATATTCTCAAGCAACGT
AACACTTATTTAAAAAGTGCTAAACAAATTGATGCTACCTTTTTAGCAGTCTTAGATGAGCAACTTGCTCATTATGGAAG
TCGAGTTATCGAGGACCGCATGGGTTTTATCGAAGCTTTAGAAAAAGAAGCTAATGCCCATCATCAAGCCATTTCTAACG
GTTTAGAAAATCTTACCCTTTCTTATCAATCTTCTGTTCATTTTGAGGAAAAATCTGATGTTTACCAGAATTTTTTAGAA
CAACTTAAAAAAAATCATCAAAAAGACTTTTTCCGGAAGAATACTAGTGTTGGGCCTCATCGTGATGATTTAGTTTTTTA
CATTAATGAGATGAATGCTAATTTTGCTAGTCAAGGACAGCATCGTAGTCTCATTCTCTCTCTAAAAATGGCAGAAGTCA
GTTTGATGAAAGCATTGACAGGAGATAATCCTATTCTTTTACTTGATGATGTCATGAGTGAGCTAGACAACACAAGACAA
ACAAAATTACTTGAAACAATCATTAAAGAAAATGTCCAAACCTTTATTACAACGACAAGCCTAGAACATCTTTCGCAATT
ACCAGAAGATATTCGGATTTTTCATGTTACAAAAGGCACTATTAAGGTTAACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.637

100

0.626
  recF Bacillus subtilis subsp. subtilis str. 168

44.205

100

0.451