Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   EQB46_RS02685 Genome accession   NZ_LR129843
Coordinates   486648..487379 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 180-2 isolate 180-2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 481648..492379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB46_RS02655 dnaK 481665..483488 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  EQB46_RS02660 - 483501..483854 (+) 354 WP_000115730.1 hypothetical protein -
  EQB46_RS02665 dnaJ 484059..485195 (+) 1137 WP_001066293.1 molecular chaperone DnaJ -
  EQB46_RS02670 - 485517..485711 (-) 195 WP_001808905.1 hypothetical protein -
  EQB46_RS02675 - 485873..486160 (-) 288 WP_000777760.1 hypothetical protein -
  EQB46_RS02680 - 486170..486580 (-) 411 WP_001278301.1 HIT family protein -
  EQB46_RS02685 pptA 486648..487379 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQB46_RS02690 pptB 487376..488425 (+) 1050 WP_000653752.1 ABC transporter permease Regulator
  EQB46_RS02695 - 488593..488922 (-) 330 WP_000132570.1 hypothetical protein -
  EQB46_RS02700 - 489198..489536 (+) 339 WP_000682119.1 LytTR family DNA-binding domain-containing protein -
  EQB46_RS02705 comE/blpR 489541..490278 (+) 738 WP_001219127.1 response regulator transcription factor Regulator
  EQB46_RS02710 - 490292..491632 (+) 1341 WP_001017622.1 sensor histidine kinase -
  EQB46_RS02715 blpC 491674..491829 (-) 156 WP_000358813.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=993863 EQB46_RS02685 WP_000889923.1 486648..487379(+) (pptA) [Streptococcus pneumoniae strain 180-2 isolate 180-2]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=993863 EQB46_RS02685 WP_000889923.1 486648..487379(+) (pptA) [Streptococcus pneumoniae strain 180-2 isolate 180-2]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708