Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EQB46_RS02690 Genome accession   NZ_LR129843
Coordinates   487376..488425 (+) Length   349 a.a.
NCBI ID   WP_000653752.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 180-2 isolate 180-2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 482376..493425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB46_RS02660 - 483501..483854 (+) 354 WP_000115730.1 hypothetical protein -
  EQB46_RS02665 dnaJ 484059..485195 (+) 1137 WP_001066293.1 molecular chaperone DnaJ -
  EQB46_RS02670 - 485517..485711 (-) 195 WP_001808905.1 hypothetical protein -
  EQB46_RS02675 - 485873..486160 (-) 288 WP_000777760.1 hypothetical protein -
  EQB46_RS02680 - 486170..486580 (-) 411 WP_001278301.1 HIT family protein -
  EQB46_RS02685 pptA 486648..487379 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQB46_RS02690 pptB 487376..488425 (+) 1050 WP_000653752.1 ABC transporter permease Regulator
  EQB46_RS02695 - 488593..488922 (-) 330 WP_000132570.1 hypothetical protein -
  EQB46_RS02700 - 489198..489536 (+) 339 WP_000682119.1 LytTR family DNA-binding domain-containing protein -
  EQB46_RS02705 comE/blpR 489541..490278 (+) 738 WP_001219127.1 response regulator transcription factor Regulator
  EQB46_RS02710 - 490292..491632 (+) 1341 WP_001017622.1 sensor histidine kinase -
  EQB46_RS02715 blpC 491674..491829 (-) 156 WP_000358813.1 quorum-sensing system pheromone BlpC -
  EQB46_RS02720 - 491886..493247 (-) 1362 WP_001069092.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40652.84 Da        Isoelectric Point: 9.9405

>NTDB_id=993864 EQB46_RS02690 WP_000653752.1 487376..488425(+) (pptB) [Streptococcus pneumoniae strain 180-2 isolate 180-2]
MKDLFLKRKQAFRKECLCYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWIFVQTLFLLLFAPLFLVMGYGLPVFLVYVLLLGVGKYFLFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKVVQKVSGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLISFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=993864 EQB46_RS02690 WP_000653752.1 487376..488425(+) (pptB) [Streptococcus pneumoniae strain 180-2 isolate 180-2]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTTGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACCGGCATTTCCCTAGTCTT
TTGGATTTTTGTTCAGACCCTCTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGTCATGGGTTATGGCTTGCCTGTTTTTC
TGGTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCTCTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCCTATCTGGACTTTATTCTAAAGGTTGTTCAGAAGGTGTCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATTTGCGAAATGGAGACCTTTTTGCCCTTAGTCTCCGTCTGCTCTTGCTTTCT
TTGCTGGCGCAGGTCTTTATCGAGCAATCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTTTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGATCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467