Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   TPELB_RS12000 Genome accession   NZ_CP154622
Coordinates   2446704..2448473 (-) Length   589 a.a.
NCBI ID   WP_343337364.1    Uniprot ID   -
Organism   Terrisporobacter petrolearius strain ELB     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2441704..2453473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TPELB_RS11985 (TPELB_23990) - 2442666..2443163 (-) 498 WP_074916249.1 GNAT family N-acetyltransferase -
  TPELB_RS11990 (TPELB_24000) - 2443340..2444689 (-) 1350 WP_343337360.1 protein kinase -
  TPELB_RS11995 (TPELB_24010) rcrQ 2444948..2446711 (-) 1764 WP_343337362.1 ABC transporter ATP-binding protein Regulator
  TPELB_RS12000 (TPELB_24020) rcrP 2446704..2448473 (-) 1770 WP_343337364.1 ABC transporter ATP-binding protein Regulator
  TPELB_RS12005 (TPELB_24030) - 2448642..2449319 (+) 678 WP_206923664.1 response regulator transcription factor -
  TPELB_RS12010 (TPELB_24040) - 2449309..2450367 (+) 1059 WP_343337367.1 HAMP domain-containing sensor histidine kinase -
  TPELB_RS12015 (TPELB_24050) - 2450410..2451810 (-) 1401 WP_343337369.1 protein kinase family protein -
  TPELB_RS12020 (TPELB_24060) - 2451930..2452517 (-) 588 WP_343337371.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66144.03 Da        Isoelectric Point: 9.0779

>NTDB_id=993814 TPELB_RS12000 WP_343337364.1 2446704..2448473(-) (rcrP) [Terrisporobacter petrolearius strain ELB]
MLKILKYLTKKDWMFVLCSFLFVVVQVYLDLRLPDYMSEITRLVQTPNSEMREILSAGGYMLLYAFGSLIAAFIVGYFAA
QIASNLSWKLRSSVYDKIEGFSMAEINKFSTPSLITRSTNDITQIQNIVAMGLQLIIKAPITAVWAVCKILDKGWQWSSA
TGGAILVLVLIILVIMIFALPRFKKIQKLTDRLNLVTRENLTGMRVVRAYNAENYQNSKFENVNEEITNNNLVINRVMSI
LQPGMMFVLNGLTLAIYWIGAYLINDANIMDKMNLFSDMIVFSSYSMQVIMAFMMLTMIFIMMPRASVSAKRILEVLNTK
ESIVDGDGKFEKTSKTGEIEFKNVSFKYPDSEGSDYVLRDINFTAKMGETVAIIGSTGSGKTSLINLIPRFYDVTEGEVL
VNGVNVKKYKQKELNNLLGYVHQKAVLFSGDITSNVAYGNNGKENYSELDVKRAVKIAQGTEFVENMENTYNASISQGGS
NVSGGQKQRLSIARAICKKAEIYIFDDSFSALDYKTDRKLRSVLKHEISNTTNLIVAQRIGTIIDADKIIVLDEGQIAGM
GTHHELMKKCRVYQEIAYSQLSKEELANA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=993814 TPELB_RS12000 WP_343337364.1 2446704..2448473(-) (rcrP) [Terrisporobacter petrolearius strain ELB]
ATGTTAAAGATATTAAAATATTTAACAAAAAAAGACTGGATGTTTGTACTTTGCAGCTTTTTATTTGTAGTAGTGCAAGT
ATATCTTGATTTAAGATTACCAGATTATATGTCAGAAATAACAAGGTTAGTTCAGACACCAAATAGTGAAATGAGGGAAA
TATTAAGTGCTGGGGGTTATATGCTACTGTATGCCTTTGGTAGTTTAATAGCAGCTTTTATAGTAGGTTATTTTGCAGCC
CAAATAGCTTCAAATTTATCATGGAAACTTCGTTCAAGCGTATACGATAAAATAGAAGGATTTTCAATGGCTGAAATTAA
TAAATTTTCTACACCTAGTTTAATAACACGCTCAACTAATGATATTACTCAAATTCAAAATATTGTTGCTATGGGACTTC
AATTAATAATAAAAGCTCCAATTACAGCAGTTTGGGCAGTTTGTAAAATTCTAGATAAAGGATGGCAATGGAGCAGCGCC
ACTGGTGGAGCCATATTAGTATTAGTATTAATAATCTTAGTAATAATGATATTTGCCTTACCTAGATTTAAAAAGATTCA
AAAATTAACTGACAGACTTAACTTAGTAACAAGAGAAAATTTAACAGGAATGCGTGTAGTTCGTGCATATAATGCAGAAA
ACTATCAAAATAGCAAATTTGAAAATGTAAATGAAGAGATAACTAACAACAATTTAGTAATAAATAGAGTTATGTCAATA
TTGCAACCAGGAATGATGTTTGTTTTGAATGGATTAACACTTGCCATATACTGGATAGGTGCTTATTTGATAAATGATGC
GAATATTATGGATAAAATGAATTTATTTAGTGATATGATAGTCTTCTCATCTTATTCAATGCAGGTAATAATGGCATTTA
TGATGTTAACAATGATATTTATAATGATGCCAAGAGCTTCAGTTTCAGCTAAACGTATACTTGAAGTATTAAATACAAAG
GAAAGTATAGTTGATGGAGATGGAAAATTTGAAAAGACTTCAAAAACTGGTGAAATAGAATTCAAAAATGTTAGCTTTAA
ATATCCTGACTCAGAAGGTTCAGACTATGTCCTTCGTGATATAAACTTTACTGCTAAAATGGGTGAAACAGTTGCAATAA
TTGGATCCACTGGAAGTGGAAAAACTTCTTTAATAAATTTAATACCAAGGTTTTATGATGTTACAGAAGGTGAAGTATTA
GTAAATGGAGTTAATGTAAAAAAATATAAACAAAAAGAGCTAAACAATCTTTTAGGATACGTGCATCAAAAGGCAGTGTT
ATTTTCTGGAGATATAACATCAAACGTTGCCTATGGTAATAATGGAAAGGAAAATTACTCTGAGTTAGACGTGAAAAGAG
CTGTGAAAATAGCCCAAGGAACTGAATTTGTTGAGAATATGGAAAACACCTACAATGCAAGTATTTCTCAAGGAGGAAGT
AACGTATCAGGAGGACAAAAGCAAAGATTATCCATAGCAAGAGCAATATGTAAAAAAGCTGAAATATACATATTTGACGA
TTCTTTCTCAGCACTTGACTATAAAACTGATAGAAAACTTAGATCTGTATTAAAACATGAAATATCAAATACTACAAATT
TAATAGTAGCGCAACGTATAGGTACCATAATAGATGCAGACAAAATAATAGTTCTAGATGAAGGACAAATAGCAGGTATG
GGAACTCACCATGAACTTATGAAAAAATGTAGAGTTTATCAGGAAATAGCATATTCTCAGCTTTCAAAGGAGGAATTAGC
CAATGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-508)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.416

100

0.514

Multiple sequence alignment