Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   TPELB_RS11995 Genome accession   NZ_CP154622
Coordinates   2444948..2446711 (-) Length   587 a.a.
NCBI ID   WP_343337362.1    Uniprot ID   -
Organism   Terrisporobacter petrolearius strain ELB     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2439948..2451711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TPELB_RS11970 (TPELB_23960) - 2440086..2440544 (-) 459 WP_206923657.1 hypothetical protein -
  TPELB_RS11975 (TPELB_23970) - 2440676..2441218 (-) 543 WP_074916253.1 NADH peroxidase -
  TPELB_RS11980 (TPELB_23980) - 2441333..2442565 (-) 1233 WP_276632272.1 VanW family protein -
  TPELB_RS11985 (TPELB_23990) - 2442666..2443163 (-) 498 WP_074916249.1 GNAT family N-acetyltransferase -
  TPELB_RS11990 (TPELB_24000) - 2443340..2444689 (-) 1350 WP_343337360.1 protein kinase -
  TPELB_RS11995 (TPELB_24010) rcrQ 2444948..2446711 (-) 1764 WP_343337362.1 ABC transporter ATP-binding protein Regulator
  TPELB_RS12000 (TPELB_24020) rcrP 2446704..2448473 (-) 1770 WP_343337364.1 ABC transporter ATP-binding protein Regulator
  TPELB_RS12005 (TPELB_24030) - 2448642..2449319 (+) 678 WP_206923664.1 response regulator transcription factor -
  TPELB_RS12010 (TPELB_24040) - 2449309..2450367 (+) 1059 WP_343337367.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64978.28 Da        Isoelectric Point: 6.0796

>NTDB_id=993813 TPELB_RS11995 WP_343337362.1 2444948..2446711(-) (rcrQ) [Terrisporobacter petrolearius strain ELB]
MLNKNKQKPQGSFGNLLAYMKKYSFVLILAFIFAIGGSIITVISPDKLSEVTNLIIKGIVAGINMDKISSICLTLAGLYG
ISVVLSYLQGFIMATVTQKTTKELRSDISNKMNKLPLKYFDKTTVGDVLSRMTNDVDTIGQTLNQSIGTLVSAISLLLGS
LYMMTTTNITLTITAVVSTIIGFGLMMLIISKSQKYFEHQQRYLGEINGHIEEAYTGHSVMKVYNAGEETNEKFKILNDN
LKQSAWKSQFISGLMMPLMSFIGNFGYVAVCVVGAVLAFNNKISFGVIVAFMMYIRFFTQPLAQFAQAATSLQSTSAACK
RVFEFLQEEEMEDESDKNISLENVEGHVKFEHVKFGYDKDKLIIKDFSADIKSGQKVAIVGPTGAGKTTLVNLLMKFYDV
NSGTIKIDEVPIQSLSREKVHELFCMVLQDTWLFEGTIRENIIYNKEDVSQSVIVSACKAVGVDHFIRTLPDGYDTVLDD
NTNLSAGQKQLITIARAMVKNAPLLILDEATSSVDTRTELLIQEAMDKLTVGKTSFVIAHRLSTIKNADVILVMKDGDII
ESGNHEELLSENGFYAELYNSQFEKAS

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=993813 TPELB_RS11995 WP_343337362.1 2444948..2446711(-) (rcrQ) [Terrisporobacter petrolearius strain ELB]
ATGCTTAATAAAAATAAACAAAAGCCACAAGGAAGCTTCGGCAACTTATTGGCATATATGAAAAAATATAGTTTTGTATT
AATTTTAGCCTTTATATTTGCCATAGGTGGGTCAATAATAACAGTTATTAGTCCAGACAAATTAAGTGAAGTTACTAATT
TGATTATAAAAGGAATAGTAGCTGGAATTAACATGGACAAGATATCTAGTATATGTTTAACATTGGCAGGATTATATGGT
ATTAGTGTAGTGTTATCTTATTTGCAAGGTTTTATAATGGCAACAGTAACACAAAAGACTACTAAAGAGTTAAGAAGTGA
TATATCTAATAAAATGAATAAATTACCATTAAAGTATTTTGATAAAACTACTGTTGGCGATGTTCTAAGTCGTATGACTA
ATGATGTGGATACAATAGGTCAAACTCTAAATCAAAGTATAGGGACTTTAGTAAGTGCTATATCCTTATTATTAGGTTCA
TTGTATATGATGACAACTACAAATATCACTTTAACAATTACAGCAGTAGTATCTACAATAATTGGTTTTGGATTAATGAT
GTTAATAATATCAAAATCTCAAAAATATTTCGAACATCAACAACGCTACCTTGGAGAAATAAATGGACATATAGAAGAAG
CTTATACTGGTCATAGTGTAATGAAAGTATATAACGCAGGGGAAGAAACAAATGAAAAGTTTAAAATATTAAATGATAAT
CTTAAACAAAGTGCATGGAAATCACAATTTATATCAGGTTTAATGATGCCTTTAATGTCGTTTATCGGTAACTTTGGATA
TGTGGCAGTTTGTGTTGTAGGTGCAGTACTAGCCTTTAATAATAAAATAAGTTTTGGTGTAATAGTAGCATTTATGATGT
ATATTAGATTTTTTACACAACCCCTTGCTCAATTTGCTCAAGCAGCAACTTCTCTACAGTCAACATCAGCTGCATGTAAA
AGAGTATTTGAGTTTTTACAAGAAGAGGAAATGGAAGATGAAAGCGATAAAAACATATCTTTAGAGAACGTAGAAGGTCA
TGTTAAATTTGAACATGTTAAATTTGGATATGATAAAGATAAATTAATAATAAAAGATTTCTCTGCTGATATTAAATCAG
GACAAAAAGTTGCAATAGTAGGACCAACAGGAGCAGGTAAAACTACTTTAGTAAACTTATTAATGAAGTTTTACGATGTA
AATAGCGGAACAATAAAAATAGATGAAGTACCAATACAAAGTCTAAGTAGAGAAAAGGTACATGAGTTATTTTGCATGGT
ACTTCAAGACACATGGTTATTTGAAGGAACGATTAGAGAAAATATAATTTACAATAAAGAAGATGTGTCACAATCAGTTA
TAGTATCTGCTTGTAAAGCTGTTGGAGTAGATCATTTTATAAGAACTTTACCTGATGGGTATGACACCGTATTAGATGAT
AATACTAATTTATCAGCTGGACAAAAACAGTTAATTACTATAGCAAGAGCAATGGTGAAAAATGCACCTTTATTAATACT
AGATGAGGCAACAAGTTCTGTAGATACTCGTACAGAATTATTAATACAAGAGGCTATGGATAAATTAACAGTAGGAAAAA
CTTCATTTGTTATAGCTCATAGACTATCAACAATAAAAAATGCTGATGTAATTTTAGTTATGAAAGATGGAGATATTATA
GAAAGTGGAAATCATGAAGAACTTTTAAGTGAAAATGGATTCTATGCAGAACTTTATAATAGTCAATTTGAAAAAGCAAG
TTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-302)

ABC transporter (ABC_tran)

(365-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.478

98.467

0.576

Multiple sequence alignment