Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QMG88_RS12375 Genome accession   NZ_AP027052
Coordinates   2687668..2689059 (-) Length   463 a.a.
NCBI ID   WP_022603175.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2682668..2694059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG88_RS12340 (TUMSATVNIG3_24070) moaE 2683309..2683770 (-) 462 WP_281826721.1 molybdopterin synthase catalytic subunit MoaE -
  QMG88_RS12345 (TUMSATVNIG3_24080) moaD 2683774..2684019 (-) 246 WP_004408164.1 molybdopterin synthase sulfur carrier subunit -
  QMG88_RS12350 (TUMSATVNIG3_24090) moaC 2684019..2684495 (-) 477 WP_004408166.1 cyclic pyranopterin monophosphate synthase MoaC -
  QMG88_RS12355 (TUMSATVNIG3_24100) moaB 2684505..2685017 (-) 513 WP_004408168.1 molybdenum cofactor biosynthesis protein B -
  QMG88_RS12360 (TUMSATVNIG3_24110) moaA 2685094..2686086 (-) 993 WP_022591758.1 GTP 3',8-cyclase MoaA -
  QMG88_RS12365 (TUMSATVNIG3_24120) yvcK 2686414..2687301 (+) 888 WP_004408174.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  QMG88_RS12370 (TUMSATVNIG3_24130) - 2687290..2687637 (-) 348 WP_022550093.1 Hpt domain-containing protein -
  QMG88_RS12375 (TUMSATVNIG3_24140) luxO 2687668..2689059 (-) 1392 WP_022603175.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QMG88_RS12380 (TUMSATVNIG3_24150) uvrB 2689311..2691341 (-) 2031 WP_281826727.1 excinuclease ABC subunit UvrB -
  QMG88_RS12390 (TUMSATVNIG3_24160) rsxA 2692372..2692953 (+) 582 WP_022550090.1 electron transport complex subunit RsxA -
  QMG88_RS12395 (TUMSATVNIG3_24170) rsxB 2692953..2693531 (+) 579 WP_004408179.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51163.24 Da        Isoelectric Point: 4.9746

>NTDB_id=99375 QMG88_RS12375 WP_022603175.1 2687668..2689059(-) (luxO) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
MQDTTSNPNPKYLLMVEDTASVAALYRSYLSPLGLDITIVGTGKDAVESLEERTPDLILLDLRLPDMTGMDVLSSVKSNY
PDVPVIFMTAHGSIDTAVEAMRKGAQDFLIKPCEADRLRVTVNNAIRKAGKLRSPSSEPDNNYQGFIGSSQTMQAVYRTI
DSAAPSKASVFITGESGTGKEVCAEAIHAASKRGENPFIAINCAAIPKDLIESELFGHVKGAFTGASTDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRDR
GEDVVEIAYSLLGYMSHEEGKGFVRFSQQVVDKFIEYEWPGNVRQLQNVLRNAVVLNHGSEITLNMLPPPLNLPSVSDLK
QVNAYDAKSTKLSVEEIRPLWLTEKSAIEQAIEACEGNIPKAAGYLDVSPSTLYRKLQAWKEQ

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=99375 QMG88_RS12375 WP_022603175.1 2687668..2689059(-) (luxO) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
ATGCAAGACACAACTTCTAACCCCAATCCTAAATACCTATTGATGGTGGAGGATACCGCCTCAGTAGCAGCGCTCTATCG
ATCTTACCTCAGTCCACTGGGGCTGGACATTACTATTGTCGGAACAGGTAAAGATGCAGTTGAAAGCCTGGAAGAGCGAA
CACCAGACCTGATTCTTCTCGACTTACGCCTTCCTGATATGACGGGCATGGACGTTCTTTCTTCGGTGAAATCAAACTAC
CCCGATGTCCCTGTCATTTTTATGACCGCGCACGGTTCAATCGACACCGCTGTTGAGGCAATGCGTAAGGGTGCTCAGGA
CTTTTTAATTAAGCCTTGTGAGGCAGACCGCCTGCGTGTAACGGTCAATAACGCCATTCGCAAAGCAGGGAAACTTCGTT
CTCCAAGTAGCGAGCCCGATAACAACTACCAGGGCTTTATTGGCAGTAGCCAGACCATGCAGGCTGTTTACCGAACTATC
GACTCCGCGGCTCCCAGTAAAGCGTCAGTATTTATTACGGGCGAAAGTGGTACCGGTAAAGAAGTGTGTGCAGAAGCGAT
TCATGCCGCCAGTAAACGTGGCGAAAACCCGTTTATTGCCATCAACTGTGCCGCAATACCAAAAGACTTAATTGAAAGTG
AGCTGTTTGGTCATGTGAAAGGGGCGTTTACCGGGGCATCAACCGACAGGCAGGGTGCGGCAGAGCTTGCAGACGGCGGT
ACGCTGTTCTTGGATGAACTGTGTGAAATGGATCTGGACCTGCAAACCAAACTGCTTAGATTCATTCAAACGGGTACCTT
CCAAAAGGTTGGTTCTTCTAAAATGAAGAGTGTAGACGTACGCTTTGTGTGCGCGACTAACCGTGATCCCTGGAAAGAAG
TTCAGGAAGGTCGCTTCCGAGAAGATTTGTATTACCGTTTGTATGTTATTCCACTGCACCTTCCTCCTTTGCGAGACAGA
GGGGAAGATGTAGTAGAGATTGCTTATTCGTTACTCGGTTACATGTCTCATGAAGAGGGTAAAGGGTTTGTTCGGTTCTC
GCAGCAAGTCGTTGATAAATTTATTGAATACGAATGGCCGGGTAATGTTCGTCAGCTTCAGAATGTGCTTCGTAATGCCG
TAGTACTCAATCATGGTAGCGAGATCACATTAAACATGTTGCCACCGCCATTAAATTTGCCTTCTGTATCAGATTTGAAG
CAAGTAAATGCATATGACGCAAAATCAACTAAACTCTCAGTAGAAGAAATTCGACCACTGTGGCTTACCGAAAAAAGTGC
GATAGAACAAGCAATAGAGGCCTGTGAAGGAAATATTCCAAAGGCTGCGGGTTATTTAGATGTCAGCCCATCTACTTTGT
ATCGCAAGCTACAAGCTTGGAAAGAACAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

82.511

96.328

0.795
  pilR Pseudomonas aeruginosa PAK

39.286

96.76

0.38

Multiple sequence alignment