Detailed information NTG0993744

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RGP98_RS05065
• Genome accession: NZ_CP154604
• Coordinates: 1041018..1041818 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 413706
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1036018..1046818

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RGP98_RS05030 (RGP98_05030)	gspH	1036174..1036689 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
RGP98_RS05035 (RGP98_05035)	gspI	1036686..1037051 (+)	366	WP_048993360.1	type II secretion system minor pseudopilin GspI	-
RGP98_RS05040 (RGP98_05040)	gspJ	1037048..1037644 (+)	597	WP_064152192.1	type II secretion system minor pseudopilin GspJ	-
RGP98_RS05045 (RGP98_05045)	gspK	1037641..1038627 (+)	987	WP_021467522.1	type II secretion system minor pseudopilin GspK	-
RGP98_RS05050 (RGP98_05050)	gspL	1038614..1039807 (+)	1194	WP_025985182.1	type II secretion system protein GspL	-
RGP98_RS05055 (RGP98_05055)	-	1039800..1040285 (+)	486	WP_025368434.1	type II secretion system protein M	-
RGP98_RS05060 (RGP98_05060)	-	1040275..1041021 (+)	747	WP_064152193.1	type II secretion system protein N	-
RGP98_RS05065 (RGP98_05065)	pilD	1041018..1041818 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
RGP98_RS05070 (RGP98_05070)	hrpB	1041866..1044295 (-)	2430	WP_004222692.1	ATP-dependent helicase HrpB	-
RGP98_RS05075 (RGP98_05075)	thpR	1044368..1044904 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
RGP98_RS05080 (RGP98_05080)	sfsA	1044904..1045620 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RGP98_RS05085 (RGP98_05085)	dksA	1045783..1046238 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=993744 RGP98_RS05065 WP_004145898.1 1041018..1041818(+) (pilD) [Klebsiella pneumoniae strain 413706]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=993744 RGP98_RS05065 WP_004145898.1 1041018..1041818(+) (pilD) [Klebsiella pneumoniae strain 413706]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGGCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425