Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   E0E10_RS09280 Genome accession   NZ_LR027878
Coordinates   1804862..1806124 (-) Length   420 a.a.
NCBI ID   WP_000472306.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2003 isolate BPH2003     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1799862..1811124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E10_RS09255 - 1800060..1800728 (-) 669 WP_000805950.1 uroporphyrinogen-III synthase -
  E0E10_RS09260 hemC 1800750..1801676 (-) 927 WP_001230228.1 hydroxymethylbilane synthase -
  E0E10_RS09265 ccsA 1801718..1802533 (-) 816 WP_001157329.1 cytochrome c biogenesis protein -
  E0E10_RS09270 hemA 1802555..1803901 (-) 1347 WP_000545451.1 glutamyl-tRNA reductase -
  E0E10_RS09275 yihA 1804118..1804708 (-) 591 WP_000867697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  E0E10_RS09280 clpX 1804862..1806124 (-) 1263 WP_000472306.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  E0E10_RS09285 tig 1806275..1807576 (-) 1302 WP_000127573.1 trigger factor -
  E0E10_RS09290 - 1807624..1807734 (-) 111 WP_001790560.1 hypothetical protein -
  E0E10_RS09295 - 1807739..1808668 (-) 930 WP_001280018.1 hypothetical protein -
  E0E10_RS09300 - 1808687..1809295 (-) 609 WP_000032657.1 NUDIX domain-containing protein -
  E0E10_RS09310 rplT 1809437..1809793 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  E0E10_RS09315 rpmI 1809840..1810040 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  E0E10_RS09320 infC 1810069..1810596 (-) 528 WP_001791162.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46287.44 Da        Isoelectric Point: 4.2645

>NTDB_id=993488 E0E10_RS09280 WP_000472306.1 1804862..1806124(-) (clpX) [Staphylococcus aureus strain BPH2003 isolate BPH2003]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGSKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=993488 E0E10_RS09280 WP_000472306.1 1804862..1806124(-) (clpX) [Staphylococcus aureus strain BPH2003 isolate BPH2003]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATGACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTAGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGATCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCATTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACCTTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACGACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGCAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

67.168

95

0.638
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531