Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAHT65_RS08840 Genome accession   NZ_CP154443
Coordinates   1703972..1704409 (-) Length   145 a.a.
NCBI ID   WP_343311370.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1698972..1709409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS08810 (AAHT65_08810) - 1699063..1700199 (+) 1137 WP_343311369.1 zinc-dependent alcohol dehydrogenase -
  AAHT65_RS08815 (AAHT65_08815) - 1700212..1700667 (+) 456 WP_088116474.1 RDD family protein -
  AAHT65_RS08820 (AAHT65_08820) - 1700753..1701082 (+) 330 WP_088116475.1 YckD family protein -
  AAHT65_RS08825 (AAHT65_08825) - 1701285..1702013 (+) 729 WP_063638715.1 AAA family ATPase -
  AAHT65_RS08830 (AAHT65_08830) - 1702083..1703519 (+) 1437 WP_088116477.1 glycoside hydrolase family 1 protein -
  AAHT65_RS08835 (AAHT65_08835) nin/comJ 1703555..1703953 (-) 399 WP_010787604.1 competence protein ComJ Regulator
  AAHT65_RS08840 (AAHT65_08840) nucA/comI 1703972..1704409 (-) 438 WP_343311370.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAHT65_RS08845 (AAHT65_08845) - 1704631..1706334 (-) 1704 WP_343311371.1 methyl-accepting chemotaxis protein -
  AAHT65_RS08850 (AAHT65_08850) hxlB 1706463..1707020 (-) 558 WP_010787607.1 6-phospho-3-hexuloisomerase -
  AAHT65_RS08855 (AAHT65_08855) hxlA 1707027..1707659 (-) 633 WP_315916363.1 3-hexulose-6-phosphate synthase -
  AAHT65_RS08860 (AAHT65_08860) - 1707878..1708243 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15945.67 Da        Isoelectric Point: 4.1626

>NTDB_id=993424 AAHT65_RS08840 WP_343311370.1 1703972..1704409(-) (nucA/comI) [Bacillus atrophaeus strain SW]
MDLLKSLLLILVIIAAAIAGLVKGDFSSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEERR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=993424 AAHT65_RS08840 WP_343311370.1 1703972..1704409(-) (nucA/comI) [Bacillus atrophaeus strain SW]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTC
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGGGCTGAAGAACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCAGCTCACTGATT
ATCCAGATGGAACGAAAGTGTTATTTACCATCCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

81.944

99.31

0.814

Multiple sequence alignment