Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   AAHT65_RS08875 Genome accession   NZ_CP154443
Coordinates   1722852..1722992 (+) Length   46 a.a.
NCBI ID   WP_223254972.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1717852..1727992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS08870 (AAHT65_08870) - 1719788..1722763 (+) 2976 Protein_1682 amino acid adenylation domain-containing protein -
  AAHT65_RS08875 (AAHT65_08875) comS 1722852..1722992 (+) 141 WP_223254972.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5352.32 Da        Isoelectric Point: 10.1700

>NTDB_id=993425 AAHT65_RS08875 WP_223254972.1 1722852..1722992(+) (comS) [Bacillus atrophaeus strain SW]
MNRFSKRLIKSIILYPRPSEGCISSISLDKQAQATTSLLYFCWKEK

Nucleotide


Download         Length: 141 bp        

>NTDB_id=993425 AAHT65_RS08875 WP_223254972.1 1722852..1722992(+) (comS) [Bacillus atrophaeus strain SW]
TTGAACCGATTCAGCAAGCGCCTTATCAAGAGCATTATCCTGTATCCTCGGCCCAGCGAAGGATGTATATCCTCAATCAG
CTTGGACAAACAAGCACAAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGAGAAGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(1-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

80.435

100

0.804

Multiple sequence alignment