Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAHT66_RS11665 Genome accession   NZ_CP154441
Coordinates   2243949..2244716 (+) Length   255 a.a.
NCBI ID   WP_087990752.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2238949..2249716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS11635 (AAHT66_11635) pgpH 2239246..2241381 (+) 2136 WP_087990757.1 cyclic-di-AMP phosphodiesterase PgpH -
  AAHT66_RS11640 (AAHT66_11640) ybeY 2241382..2241855 (+) 474 WP_087990756.1 rRNA maturation RNase YbeY -
  AAHT66_RS11645 (AAHT66_11645) - 2241836..2242207 (+) 372 WP_087990755.1 diacylglycerol kinase family protein -
  AAHT66_RS11650 (AAHT66_11650) - 2242329..2242739 (+) 411 WP_010330699.1 cytidine deaminase -
  AAHT66_RS11655 (AAHT66_11655) era 2242720..2243625 (+) 906 WP_087990754.1 GTPase Era -
  AAHT66_RS11660 (AAHT66_11660) - 2243769..2243912 (+) 144 WP_087990753.1 YqzL family protein -
  AAHT66_RS11665 (AAHT66_11665) recO 2243949..2244716 (+) 768 WP_087990752.1 DNA repair protein RecO Machinery gene
  AAHT66_RS11670 (AAHT66_11670) glyQ 2245020..2245907 (+) 888 WP_087990751.1 glycine--tRNA ligase subunit alpha -
  AAHT66_RS11675 (AAHT66_11675) glyS 2245900..2247939 (+) 2040 WP_333516575.1 glycine--tRNA ligase subunit beta -
  AAHT66_RS11680 (AAHT66_11680) ccpN 2248073..2248711 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  AAHT66_RS11685 (AAHT66_11685) - 2248737..2249549 (+) 813 WP_087990749.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29373.10 Da        Isoelectric Point: 8.5552

>NTDB_id=993358 AAHT66_RS11665 WP_087990752.1 2243949..2244716(+) (recO) [Bacillus inaquosorum strain XN303]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKVGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYITELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVIIFIVQMKMLGVMGLYPELNHCVHCKSQDG
SFHFSIRDNGFICHRCFEKDPYRVPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=993358 AAHT66_RS11665 WP_087990752.1 2243949..2244716(+) (recO) [Bacillus inaquosorum strain XN303]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTTACTTTACTGACAAG
AGAACACGGAAAAGTAGGTGTTATGGCAAGAGGCGCCAAAAAAACGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAAAAAACAACCGGCCTCGGAACACTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCATATATTACCGAGTTAGTCGACAGAGGCACTGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAATTTATTTTAGAATCGCTTAAACAGCTGAACGAAGGAACAGACCCGGATGTTATCATCTTTA
TCGTTCAAATGAAAATGCTCGGTGTCATGGGGCTGTATCCCGAGCTCAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
AGCTTTCATTTTTCTATCCGTGATAACGGTTTTATTTGCCACCGCTGTTTTGAAAAAGATCCTTACAGGGTTCCGATTAA
ACCGCAAACGGCAAGGCTGTTGAGACTGTTTTATTACTTCGATCTATCAAGGCTGGGCAATGTCTCCTTAAAACAGGAAA
CAAAAGCTGAATTGAAGCAAGTGATTGATTTATATTATGAAGAATACTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

96.078

100

0.961

Multiple sequence alignment