Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AAHT66_RS06735 Genome accession   NZ_CP154441
Coordinates   1288117..1289508 (+) Length   463 a.a.
NCBI ID   WP_087991581.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1283117..1294508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS06710 (AAHT66_06710) - 1283155..1284267 (-) 1113 WP_087991563.1 LCP family protein -
  AAHT66_RS06715 (AAHT66_06715) - 1284270..1284920 (-) 651 WP_087991562.1 YigZ family protein -
  AAHT66_RS06720 (AAHT66_06720) degS 1285137..1286294 (+) 1158 WP_419800367.1 two-component sensor histidine kinase DegS Regulator
  AAHT66_RS06725 (AAHT66_06725) degU 1286377..1287066 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAHT66_RS06730 (AAHT66_06730) - 1287164..1288009 (+) 846 WP_087991560.1 DegV family protein -
  AAHT66_RS06735 (AAHT66_06735) comFA 1288117..1289508 (+) 1392 WP_087991581.1 ATP-dependent helicase ComFA Machinery gene
  AAHT66_RS06740 (AAHT66_06740) - 1289568..1289864 (+) 297 WP_087991559.1 late competence development ComFB family protein -
  AAHT66_RS06745 (AAHT66_06745) comFC 1289828..1290550 (+) 723 WP_202327956.1 double zinc ribbon domain-containing protein Machinery gene
  AAHT66_RS06750 (AAHT66_06750) - 1290620..1291039 (+) 420 WP_148962628.1 TIGR03826 family flagellar region protein -
  AAHT66_RS06755 (AAHT66_06755) flgM 1291119..1291385 (+) 267 WP_087991557.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAHT66_RS06760 (AAHT66_06760) flgN 1291400..1291882 (+) 483 WP_087991556.1 flagellar protein FlgN -
  AAHT66_RS06765 (AAHT66_06765) flgK 1291901..1293424 (+) 1524 WP_087991555.1 flagellar hook-associated protein FlgK -
  AAHT66_RS06770 (AAHT66_06770) flgL 1293434..1294330 (+) 897 WP_087991554.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52622.80 Da        Isoelectric Point: 9.7976

>NTDB_id=993339 AAHT66_RS06735 WP_087991581.1 1288117..1289508(+) (comFA) [Bacillus inaquosorum strain XN303]
MVEPDEKNITFSKELQQTLQGRHLLRTELPFSDEMIEWHIKNGYICAQYSISKNKREYRCNRCGQNDQRYFSFYYLSRKK
QLYCRSCVMMGRVSEDVLLYSWKEEDESRWKPIKLTWNGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNEGLRVCIATPRTDVVLELAPRLKAAFQGADIAALYGGGEDKGCLSPLMISTTHQLLRYKDAFDVIIVDEVDAFPY
SADQTLQFAVQKAKKKNSTLVYLSATPSKELKRKTLNGQLHSVRIPARHHQKPLPEPRFLWCGNWKKKLNGNKIPPAVKR
WIAFHVKEGRSVFLFVPSVSVLEKAAACFKDVHCRTASVHAEDKDRKEKVKQFRDGQFDLLITTTILERGVTVPKVQTGI
LGAESPIFTESALVQIAGRTGRHKEHANGDVIFFHYGKTKSMLDAKKHIKEMNALAAKNERTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=993339 AAHT66_RS06735 WP_087991581.1 1288117..1289508(+) (comFA) [Bacillus inaquosorum strain XN303]
CTGGTTGAGCCAGATGAAAAGAACATTACTTTCTCAAAAGAATTACAGCAGACGCTCCAAGGCCGTCATTTGCTCAGAAC
TGAACTCCCCTTTTCCGATGAGATGATTGAATGGCATATCAAGAACGGCTATATCTGCGCTCAATACTCTATATCCAAAA
ATAAACGGGAGTATAGGTGTAATAGGTGCGGCCAAAATGATCAGCGGTATTTTTCTTTTTATTACTTATCTAGAAAGAAG
CAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGCGAGGATGTGCTTTTATATTCATGGAAAGAGGAAGATGA
ATCTCGTTGGAAGCCTATCAAGCTGACTTGGAATGGCAAGCTCTCAAGCGGACAGCAAAAAGCTGCCAATGTCTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTTCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAGATGTTATTTCCCGGTATA
GAATCAGCGTTAAACGAAGGATTGCGAGTATGTATTGCAACACCCCGCACCGATGTTGTATTAGAGCTTGCTCCGAGACT
CAAGGCCGCCTTTCAGGGCGCTGACATTGCGGCACTTTACGGAGGCGGCGAGGACAAAGGGTGTTTATCTCCGCTTATGA
TTTCCACCACACATCAGCTTTTGCGATATAAAGACGCGTTCGATGTTATCATCGTTGATGAAGTTGATGCTTTTCCGTAT
TCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCTAAAAAGAAAAACAGCACCCTTGTTTATTTAAGTGCAACACC
CTCTAAAGAATTAAAAAGAAAAACACTGAACGGACAGCTGCATTCAGTTCGCATTCCAGCAAGACACCACCAGAAACCTT
TGCCAGAACCGCGCTTTCTATGGTGCGGAAATTGGAAAAAGAAATTAAACGGAAACAAAATTCCGCCAGCGGTAAAAAGA
TGGATAGCGTTTCATGTGAAAGAAGGGAGGTCTGTGTTTTTATTTGTTCCCTCCGTTTCTGTTTTGGAAAAGGCAGCTGC
CTGCTTTAAAGATGTTCATTGCCGAACAGCGTCTGTTCATGCGGAAGATAAGGACAGAAAAGAAAAAGTAAAGCAATTTA
GAGACGGTCAGTTTGATCTTTTAATCACAACAACAATATTAGAGAGAGGTGTCACTGTCCCCAAGGTACAAACAGGGATA
TTAGGGGCCGAATCGCCTATCTTTACGGAAAGCGCACTTGTGCAAATCGCAGGAAGAACCGGCCGGCATAAAGAACACGC
GAACGGCGATGTTATTTTCTTTCACTACGGAAAAACAAAGAGCATGCTGGATGCAAAAAAGCATATAAAAGAAATGAATG
CATTGGCGGCAAAAAATGAAAGAACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

87.905

100

0.879

Multiple sequence alignment