Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AAHT66_RS06725 Genome accession   NZ_CP154441
Coordinates   1286377..1287066 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus inaquosorum strain XN303     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1281377..1292066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS06705 (AAHT66_06705) - 1282005..1283081 (+) 1077 WP_202327955.1 MraY family glycosyltransferase -
  AAHT66_RS06710 (AAHT66_06710) - 1283155..1284267 (-) 1113 WP_087991563.1 LCP family protein -
  AAHT66_RS06715 (AAHT66_06715) - 1284270..1284920 (-) 651 WP_087991562.1 YigZ family protein -
  AAHT66_RS06720 (AAHT66_06720) degS 1285137..1286294 (+) 1158 WP_419800367.1 two-component sensor histidine kinase DegS Regulator
  AAHT66_RS06725 (AAHT66_06725) degU 1286377..1287066 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAHT66_RS06730 (AAHT66_06730) - 1287164..1288009 (+) 846 WP_087991560.1 DegV family protein -
  AAHT66_RS06735 (AAHT66_06735) comFA 1288117..1289508 (+) 1392 WP_087991581.1 ATP-dependent helicase ComFA Machinery gene
  AAHT66_RS06740 (AAHT66_06740) - 1289568..1289864 (+) 297 WP_087991559.1 late competence development ComFB family protein -
  AAHT66_RS06745 (AAHT66_06745) comFC 1289828..1290550 (+) 723 WP_202327956.1 double zinc ribbon domain-containing protein Machinery gene
  AAHT66_RS06750 (AAHT66_06750) - 1290620..1291039 (+) 420 WP_148962628.1 TIGR03826 family flagellar region protein -
  AAHT66_RS06755 (AAHT66_06755) flgM 1291119..1291385 (+) 267 WP_087991557.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAHT66_RS06760 (AAHT66_06760) flgN 1291400..1291882 (+) 483 WP_087991556.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=993338 AAHT66_RS06725 WP_003219701.1 1286377..1287066(+) (degU) [Bacillus inaquosorum strain XN303]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=993338 AAHT66_RS06725 WP_003219701.1 1286377..1287066(+) (degU) [Bacillus inaquosorum strain XN303]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGGGACGACGGAGATGAAGCGGCTCGTATTGTCGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGCGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGATGAAAATTATGTAACACATGCCCTGAAAACCGGCGCGAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGAGGTTCTTACCTTCATCCGAAGGTTACTCACA
ATCTCGTTAACGAATTCCGTCGTCTTGCAACAAGCGGAGTTTCTGCACACCCTCAGCATGAGGTCTACCCTGAAATCCGC
AGACCATTACATATCTTAACTAGACGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATCGG
TGAATCATTGTTTATCAGTGAGAAAACCGTCAAAAACCATGTGAGCAATATTTTGCAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment