Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAHT66_RS01275 Genome accession   NZ_CP154441
Coordinates   248592..249041 (+) Length   149 a.a.
NCBI ID   WP_141113425.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 243592..254041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS01255 (AAHT66_01255) hxlR 244793..245155 (-) 363 WP_087993172.1 transcriptional activator HxlR -
  AAHT66_RS01260 (AAHT66_01260) hxlA 245386..246018 (+) 633 WP_087993171.1 3-hexulose-6-phosphate synthase -
  AAHT66_RS01265 (AAHT66_01265) hxlB 246023..246580 (+) 558 WP_087993170.1 6-phospho-3-hexuloisomerase -
  AAHT66_RS01270 (AAHT66_01270) tlpC 246694..248418 (+) 1725 WP_333516805.1 methyl-accepting chemotaxis protein TlpC -
  AAHT66_RS01275 (AAHT66_01275) nucA/comI 248592..249041 (+) 450 WP_141113425.1 DNA-entry nuclease Machinery gene
  AAHT66_RS01280 (AAHT66_01280) nin/comJ 249069..249467 (+) 399 WP_087993168.1 competence protein ComJ Regulator
  AAHT66_RS01285 (AAHT66_01285) bglC 249504..250937 (-) 1434 WP_087993167.1 6-phospho-beta-glucosidase -
  AAHT66_RS01290 (AAHT66_01290) - 251010..251738 (-) 729 WP_333516806.1 AAA family ATPase -
  AAHT66_RS01295 (AAHT66_01295) - 251758..252099 (-) 342 WP_333516807.1 DUF3147 family protein -
  AAHT66_RS01300 (AAHT66_01300) - 252087..252509 (-) 423 WP_333516828.1 MarR family winged helix-turn-helix transcriptional regulator -
  AAHT66_RS01305 (AAHT66_01305) - 252645..252977 (-) 333 WP_087993163.1 YckD family protein -
  AAHT66_RS01310 (AAHT66_01310) - 253094..253515 (-) 422 Protein_250 RDD family protein -
  AAHT66_RS01315 (AAHT66_01315) - 253536..253763 (-) 228 WP_087993162.1 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16401.42 Da        Isoelectric Point: 4.4321

>NTDB_id=993322 AAHT66_RS01275 WP_141113425.1 248592..249041(+) (nucA/comI) [Bacillus inaquosorum strain XN303]
MNITMDIIKTLLLVIVVIAAAAVGLIKGDFFPTDQKTSQTKEYDETIALPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFAIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=993322 AAHT66_RS01275 WP_141113425.1 248592..249041(+) (nucA/comI) [Bacillus inaquosorum strain XN303]
GTGAACATCACGATGGACATCATAAAAACTTTACTTCTCGTCATCGTCGTCATAGCAGCTGCAGCTGTCGGCCTGATAAA
GGGGGACTTTTTCCCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGACGAAACAATCGCCCTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAACATATTAAGGATGCGATAAATGAGGGGCACTCAGATGTGTGCACCATCGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAAGACGTACCTCCTAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGGGCTTCTGTAGAATATATTTCCCCCGCTGACAACCGCGGTGCAGGCTCTTGGGTTGGGCATC
AGCTTACCGATTATCCCGACGGCACAAAGGTTTTATTCGCAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

91.946

100

0.919

Multiple sequence alignment