Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QMG91_RS15555 Genome accession   NZ_AP027049
Coordinates   3424066..3424680 (+) Length   204 a.a.
NCBI ID   WP_004397669.1    Uniprot ID   A0AAV2VQY2
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig2     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3419066..3429680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG91_RS15535 (TUMSATVNIG2_30350) - 3419587..3420309 (-) 723 WP_281827575.1 general secretion pathway protein GspB -
  QMG91_RS15540 (TUMSATVNIG2_30360) - 3420302..3421909 (-) 1608 WP_281827576.1 ExeA family protein -
  QMG91_RS15545 (TUMSATVNIG2_30370) - 3421993..3423204 (+) 1212 WP_281827578.1 multifunctional CCA addition/repair protein -
  QMG91_RS15550 (TUMSATVNIG2_30380) hpt 3423278..3423811 (-) 534 WP_004397670.1 hypoxanthine phosphoribosyltransferase -
  QMG91_RS15555 (TUMSATVNIG2_30390) opaR 3424066..3424680 (+) 615 WP_004397669.1 TetR/AcrR family transcriptional regulator Regulator
  QMG91_RS15560 (TUMSATVNIG2_30400) lpdA 3424819..3426249 (-) 1431 WP_022589429.1 dihydrolipoyl dehydrogenase -
  QMG91_RS15565 (TUMSATVNIG2_30410) aceF 3426495..3428093 (-) 1599 WP_281827582.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23439.59 Da        Isoelectric Point: 5.0114

>NTDB_id=99331 QMG91_RS15555 WP_004397669.1 3424066..3424680(+) (opaR) [Vibrio nigripulchritudo strain TUMSAT-V.nig2]
MDTVKKRPRTRLSPQKRKEQLHDIAIEVFAKRGIGRGGHADIAEIAQVSVATVFNYFQTREDLVDEVLSQVEKQYALFIN
ESLKVDATAEENLTSLTQNIIKAALDGTHWMKVWFEWSTSTREEVWPLFLSSNEESQKRIEDMFLTAMERGEVCDEHKAE
DLAKLLHGICYSLYVQANRNPDPEYLEGLVGSFLGMLCIYKQDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=99331 QMG91_RS15555 WP_004397669.1 3424066..3424680(+) (opaR) [Vibrio nigripulchritudo strain TUMSAT-V.nig2]
ATGGATACAGTAAAAAAACGTCCAAGAACAAGGCTATCTCCACAAAAGCGTAAAGAACAGCTTCACGATATTGCTATCGA
AGTGTTCGCAAAACGCGGCATCGGTCGCGGGGGTCACGCTGATATCGCAGAAATTGCACAGGTTTCTGTTGCAACAGTAT
TCAACTACTTTCAGACACGTGAAGACTTGGTTGATGAAGTACTGAGTCAGGTTGAAAAGCAATACGCGCTATTCATCAAC
GAAAGCTTGAAGGTTGACGCAACAGCTGAAGAAAACCTGACAAGCCTAACGCAAAACATCATCAAAGCTGCACTGGACGG
CACTCACTGGATGAAAGTCTGGTTTGAGTGGAGCACATCCACTCGTGAAGAAGTGTGGCCACTGTTCCTGTCTAGCAACG
AAGAGTCACAAAAGCGTATTGAAGACATGTTCCTGACAGCAATGGAGCGTGGCGAAGTATGTGACGAGCATAAAGCCGAA
GACTTAGCGAAACTGCTTCACGGCATCTGCTACTCATTGTACGTACAGGCAAACCGTAACCCGGATCCTGAGTACCTAGA
AGGTTTGGTTGGAAGCTTCCTTGGCATGCTTTGCATTTACAAGCAAGACCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(24-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

61.275

100

0.613
  hapR Vibrio cholerae C6706

59.5

98.039

0.583
  hapR Vibrio cholerae strain A1552

59.5

98.039

0.583

Multiple sequence alignment