Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AAID36_RS01625 Genome accession   NZ_CP154372
Coordinates   346169..346987 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain NCSR_106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341169..351987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAID36_RS01590 (AAID36_01590) - 341751..341881 (-) 131 Protein_304 hypothetical protein -
  AAID36_RS01595 (AAID36_01595) rpoZ 341920..342198 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AAID36_RS01600 (AAID36_01600) gmk 342271..342900 (-) 630 WP_000015937.1 guanylate kinase -
  AAID36_RS01605 (AAID36_01605) ispH 343023..343973 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAID36_RS01610 (AAID36_01610) fimU 344143..344616 (+) 474 WP_001214060.1 GspH/FimT family pseudopilin Machinery gene
  AAID36_RS01615 (AAID36_01615) pilV 344610..345170 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AAID36_RS01620 (AAID36_01620) pilW 345171..346172 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  AAID36_RS01625 (AAID36_01625) pilX 346169..346987 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AAID36_RS01630 (AAID36_01630) pilY1 346999..350853 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  AAID36_RS01635 (AAID36_01635) pilY2 350864..351346 (+) 483 WP_001046489.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AAID36_RS01640 (AAID36_01640) pilE 351343..351768 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=993093 AAID36_RS01625 WP_000149374.1 346169..346987(+) (pilX) [Acinetobacter baumannii strain NCSR_106]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=993093 AAID36_RS01625 WP_000149374.1 346169..346987(+) (pilX) [Acinetobacter baumannii strain NCSR_106]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment