Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   AAIB43_RS09115 Genome accession   NZ_CP154366
Coordinates   1910488..1911051 (-) Length   187 a.a.
NCBI ID   WP_343323013.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 14BME10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1905488..1916051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIB43_RS09085 (AAIB43_09090) - 1906045..1906983 (+) 939 WP_042362964.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  AAIB43_RS09090 (AAIB43_09095) - 1907057..1907626 (-) 570 WP_069795864.1 GNAT family N-acetyltransferase -
  AAIB43_RS09095 (AAIB43_09100) - 1907807..1908019 (+) 213 WP_029379120.1 NINE protein -
  AAIB43_RS09100 (AAIB43_09105) - 1908627..1909118 (-) 492 WP_069795865.1 hypothetical protein -
  AAIB43_RS09115 (AAIB43_09120) comK/comK1 1910488..1911051 (-) 564 WP_343323013.1 competence protein ComK Regulator
  AAIB43_RS09120 (AAIB43_09125) - 1911304..1911522 (+) 219 WP_029379123.1 IDEAL domain-containing protein -
  AAIB43_RS09125 (AAIB43_09130) - 1911622..1912608 (-) 987 WP_042362968.1 lipoate--protein ligase -
  AAIB43_RS09130 (AAIB43_09135) - 1912808..1912993 (+) 186 WP_002483735.1 DUF2187 family protein -
  AAIB43_RS09135 (AAIB43_09140) - 1912999..1913601 (+) 603 WP_029379125.1 CPBP family glutamic-type intramembrane protease -
  AAIB43_RS09140 (AAIB43_09145) - 1913668..1915176 (-) 1509 WP_069795866.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21865.20 Da        Isoelectric Point: 9.5361

>NTDB_id=993077 AAIB43_RS09115 WP_343323013.1 1910488..1911051(-) (comK/comK1) [Staphylococcus xylosus strain 14BME10]
MIQPYIIKKGDMVLQPCNLATGQYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPVDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=993077 AAIB43_RS09115 WP_343323013.1 1910488..1911051(-) (comK/comK1) [Staphylococcus xylosus strain 14BME10]
ATGATTCAACCATATATTATTAAAAAAGGTGATATGGTTTTACAACCATGCAATTTAGCTACTGGGCAATATGAAGGTAG
TTACTTGCTAAGGTATAAAGCCGACAGTCAAATTATTAAAGAACGAGTATCTAAAATCATCGACCGTTCATGTAGGTTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGATACCATGCGTATTACAGGTATAAGCAGTAAGCCACCTATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGCAGATAATACCTGGATTAATATTCATTATGTACA
TAATATTAGGCCACTTAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAACATTTCTGCTC
ATAGTATGCATCATCAATATTTAAATGGTATATACTATTATTACATGATGGATAGGGCAGCAAGAGTCGCTACATTTGAT
CCTGATTCGCCGGTTGATTATACTAAACCACAATTAAATATATATGAAGCATTGGCTAAATATTCGTTGTTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.191

97.861

0.54
  comK/comK1 Staphylococcus aureus N315

55.191

97.861

0.54

Multiple sequence alignment