Detailed information NTG0099294

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMG95_RS16360
• Genome accession: NZ_AP027045
• Coordinates: 3554751..3555737 (-)
• Length: 328 a.a.
• NCBI ID: WP_004401303.1
• Uniprot ID: A0AAV2VJY7
• Organism: Vibrio nigripulchritudo strain TUMSAT-V.nig1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3549751..3560737

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMG95_RS16345 (TUMSATVNIG1_32000)	-	3550386..3551003 (-)	618	WP_022549552.1	DUF1449 family protein	-
QMG95_RS16350 (TUMSATVNIG1_32010)	mutS	3551442..3553973 (+)	2532	WP_200767482.1	DNA mismatch repair protein MutS	-
QMG95_RS16355 (TUMSATVNIG1_32020)	-	3554044..3554565 (-)	522	WP_022549550.1	hypothetical protein	-
QMG95_RS16360 (TUMSATVNIG1_32030)	rpoS	3554751..3555737 (-)	987	WP_004401303.1	RNA polymerase sigma factor RpoS	Regulator
QMG95_RS16365 (TUMSATVNIG1_32040)	nlpD	3555796..3556719 (-)	924	WP_038124047.1	murein hydrolase activator NlpD	-
QMG95_RS16370 (TUMSATVNIG1_32050)	-	3556735..3557361 (-)	627	WP_200766173.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QMG95_RS16375 (TUMSATVNIG1_32060)	surE	3557362..3558108 (-)	747	WP_200766174.1	5'/3'-nucleotidase SurE	-
QMG95_RS16380 (TUMSATVNIG1_32070)	truD	3558136..3559179 (-)	1044	WP_200766175.1	tRNA pseudouridine(13) synthase TruD	-
QMG95_RS16385 (TUMSATVNIG1_32080)	ispF	3559183..3559659 (-)	477	WP_004401308.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMG95_RS16390 (TUMSATVNIG1_32090)	ispD	3559669..3560382 (-)	714	WP_200766176.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QMG95_RS16395 (TUMSATVNIG1_32100)	ftsB	3560391..3560675 (-)	285	WP_004401310.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37786.74 Da
• Isoelectric Point: 4.6196

>NTDB_id=99294 QMG95_RS16360 WP_004401303.1 3554751..3555737(-) (rpoS) [Vibrio nigripulchritudo strain TUMSAT-V.nig1]
MSISNAVTKVEEEFDYEAVGMEQTTREESTLTQEKQSEQKEEFEVSAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGESEKALLDIIPDVNNSD
PEVCTQDDDIKHSLIDWLDDLNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=99294 QMG95_RS16360 WP_004401303.1 3554751..3555737(-) (rpoS) [Vibrio nigripulchritudo strain TUMSAT-V.nig1]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAAGAGTTTGATTACGAAGCGGTAGGTATGGAACAAACCACCAGGGA
AGAATCTACTCTCACTCAAGAAAAACAGTCTGAACAGAAAGAAGAATTTGAGGTAAGTGCAAAAAGTTTAGACGCCACTC
AACTGTATCTCGGAGAGATCGGTTTCTCACCTCTTCTCACAGCAGAAGAAGAAGTCCTGTATGCACGTCGCGCACTTCGA
GGAGACGAAGCTGCACGCAAACGCATGATCGAAAGTAACCTTCGTTTAGTTGTTAAAATCTCTCGCCGTTACGGTAACAG
AGGGCTGGCACTGCTCGATCTGATCGAAGAAGGTAACCTAGGGCTGATCCGTGCAGTTGAGAAATTTGATCCTGAAAGAG
GTTTCCGTTTTTCAACGTACGCAACATGGTGGATTCGTCAAACCATCGAACGTGCATTGATGAACCAAACTCGCACTATT
CGTTTGCCCATACACGTAGTGAAAGAGCTGAATATCTATTTAAGAACGGCTCGGGAGCTATCGCAAAAACTGGATCATGA
ACCAACGGCAGAAGAAATTGCTCAGCAACTTGATAAGCCCGTTGATGATGTCAGCAAAATGCTTCGTCTGAATGAAAGAG
TCAGTTCCGTGGACACCCCAATCGGTGGTGAAAGCGAGAAAGCGCTTCTTGATATCATTCCAGACGTCAACAACTCTGAT
CCTGAAGTCTGTACTCAAGACGATGACATCAAACATTCTCTGATCGATTGGCTGGATGATTTGAATCCCAAGCAGAAAGA
AGTACTTGCTCGCCGTTTTGGTCTTCTAGGATATGAACCTTCAACACTGGAAGAAGTAGGGCGTGAGATCAACTTAACTC
GTGAACGCGTACGTCAGATCCAAGTTGAAGGGCTTCGCCGTTTAAGAGAGATCTTAGTGAAGCAAGGTCTGAACATGGAA
TCGCTGTTTAATGTCGAAAACGATTAG

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.284	100	0.851