Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TTHNP4_RS06210 Genome accession   NZ_LR027517
Coordinates   1129490..1130761 (+) Length   423 a.a.
NCBI ID   WP_124104839.1    Uniprot ID   -
Organism   Thermus thermophilus isolate TTHNAR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124490..1135761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTHNP4_RS06190 (TTHN1_01248) - 1125203..1125439 (-) 237 WP_011172631.1 hypothetical protein -
  TTHNP4_RS06200 (TTHN1_01249) - 1125620..1127140 (-) 1521 WP_124104838.1 glycine--tRNA ligase -
  TTHNP4_RS06205 (TTHN1_01250) clpC 1127269..1129479 (+) 2211 WP_014630003.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  TTHNP4_RS06210 (TTHN1_01251) radA 1129490..1130761 (+) 1272 WP_124104839.1 DNA repair protein RadA Machinery gene
  TTHNP4_RS06215 (TTHN1_01252) - 1130758..1131768 (+) 1011 WP_124104840.1 PIN/TRAM domain-containing protein -
  TTHNP4_RS06220 (TTHN1_01253) - 1131762..1132796 (-) 1035 WP_124104841.1 bis-aminopropyl spermidine synthase family protein -
  TTHNP4_RS06225 (TTHN1_01254) sucC 1132841..1134016 (+) 1176 WP_124104842.1 ADP-forming succinate--CoA ligase subunit beta -
  TTHNP4_RS06230 (TTHN1_01255) sucD 1134013..1134879 (+) 867 WP_014509987.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 44988.05 Da        Isoelectric Point: 6.7329

>NTDB_id=992871 TTHNP4_RS06210 WP_124104839.1 1129490..1130761(+) (radA) [Thermus thermophilus isolate TTHNAR1]
MAKATYACVECGYRTPKPLGRCPSCGSWESFQEVAPAPASRRAKPSPLPLLALSQVDEAEERRFSSGLSEVDRVLGGGFV
TGEVVLLGGEPGVGKSTLLLEMAKRMPQRVYYVAGEESPAQIKLRAQRLGVKDLLLVRETRLEPLLALLEEDPPEVLFVD
SVQTLEAGGSPGSLVAVREATSALVRFAKERGVAVVLVGHVTKEGVVAGPKSVEHAVDATLYLETAGPYRVLRSAKNRFG
PVGEIGVFRMEEAGLLEVENPSEAFLKERPLGVPGSAVALALAGERALALEVQALAAKTPFPAPRRVVQGLDGRRVDVVL
AVLERRLGLPLANLDVYVNLAGGLKVQDPGLDLAVALAVYSAVVGRPLPADLALVGEVGLAGEVRRVAGLERRLREGERA
GFGRFLHPGNLRSLQEAVEAYLT

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=992871 TTHNP4_RS06210 WP_124104839.1 1129490..1130761(+) (radA) [Thermus thermophilus isolate TTHNAR1]
ATGGCCAAGGCCACCTACGCCTGCGTGGAGTGCGGCTACCGCACCCCCAAGCCCTTGGGGCGGTGCCCCTCCTGCGGTTC
CTGGGAGAGCTTCCAGGAGGTGGCCCCCGCCCCGGCCTCGAGGCGGGCCAAGCCCTCCCCCCTCCCCCTCCTCGCCCTCT
CCCAGGTGGACGAGGCCGAGGAGCGCCGCTTCTCCTCGGGGCTTTCCGAGGTGGACCGGGTCCTGGGCGGGGGGTTCGTG
ACGGGGGAGGTGGTCCTATTGGGAGGGGAGCCCGGGGTGGGCAAGAGCACCCTCCTCCTGGAGATGGCTAAGCGGATGCC
CCAAAGGGTCTACTACGTGGCCGGGGAGGAGTCCCCCGCCCAGATCAAGCTCCGGGCGCAGCGCCTCGGGGTGAAGGACC
TCCTCCTCGTGCGGGAGACCCGCCTCGAGCCCCTCCTCGCCCTCCTGGAGGAGGACCCCCCGGAGGTCCTCTTCGTGGAC
TCCGTGCAGACCCTCGAGGCCGGGGGGAGCCCGGGGAGCTTGGTGGCCGTCCGGGAGGCGACCTCGGCCCTGGTGCGCTT
CGCCAAGGAACGGGGCGTGGCCGTGGTCCTCGTGGGCCACGTGACCAAGGAGGGGGTGGTGGCCGGCCCCAAGAGCGTGG
AGCACGCCGTGGACGCCACCCTCTACCTGGAGACCGCAGGGCCCTACCGGGTCCTGCGGAGCGCCAAGAACCGCTTTGGC
CCCGTGGGGGAGATCGGGGTCTTCCGCATGGAGGAGGCGGGGCTTCTGGAGGTGGAGAACCCCTCCGAGGCCTTCCTCAA
GGAACGCCCCCTGGGGGTGCCGGGAAGCGCCGTGGCCCTGGCCCTGGCCGGGGAGCGGGCCTTGGCCCTGGAGGTCCAGG
CCCTGGCGGCCAAAACCCCCTTCCCCGCCCCCCGCAGGGTGGTCCAGGGGCTGGACGGAAGGCGCGTGGACGTGGTCCTC
GCGGTCCTGGAGCGGAGGCTCGGCCTGCCCCTCGCCAACCTGGACGTCTACGTGAACCTCGCCGGGGGGCTCAAGGTCCA
GGACCCGGGGCTGGACCTGGCCGTAGCCCTGGCGGTGTACTCCGCCGTGGTGGGCCGCCCCCTGCCCGCCGACCTCGCCC
TGGTGGGGGAGGTGGGCCTGGCCGGGGAGGTGCGGCGGGTGGCGGGGCTGGAGCGGAGGCTTAGGGAGGGGGAGCGGGCG
GGGTTCGGCCGCTTCCTCCACCCGGGGAACCTTAGGAGCCTTCAGGAGGCTGTGGAGGCGTATCTGACATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(63-205)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(6-33)

Subunit ChlI of Mg-chelatase (ChlI)

(327-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

44.893

99.527

0.447
  radA Streptococcus pneumoniae Rx1

44.893

99.527

0.447
  radA Streptococcus pneumoniae D39

44.893

99.527

0.447
  radA Streptococcus pneumoniae TIGR4

44.893

99.527

0.447
  radA Streptococcus mitis SK321

44.893

99.527

0.447
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.953

100

0.447
  radA Streptococcus mitis NCTC 12261

44.656

99.527

0.444