Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QMG95_RS16095 Genome accession   NZ_AP027045
Coordinates   3498924..3499538 (+) Length   204 a.a.
NCBI ID   WP_004397669.1    Uniprot ID   A0AAV2VQY2
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3493924..3504538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG95_RS16075 (TUMSATVNIG1_31540) - 3494417..3495139 (-) 723 WP_200766156.1 general secretion pathway protein GspB -
  QMG95_RS16080 (TUMSATVNIG1_31550) - 3495132..3496739 (-) 1608 WP_200766157.1 ExeA family protein -
  QMG95_RS16085 (TUMSATVNIG1_31560) - 3496823..3498034 (+) 1212 WP_200766158.1 multifunctional CCA addition/repair protein -
  QMG95_RS16090 (TUMSATVNIG1_31570) hpt 3498136..3498669 (-) 534 WP_004397670.1 hypoxanthine phosphoribosyltransferase -
  QMG95_RS16095 (TUMSATVNIG1_31580) opaR 3498924..3499538 (+) 615 WP_004397669.1 TetR/AcrR family transcriptional regulator Regulator
  QMG95_RS16100 (TUMSATVNIG1_31590) lpdA 3499677..3501107 (-) 1431 WP_022589429.1 dihydrolipoyl dehydrogenase -
  QMG95_RS16105 (TUMSATVNIG1_31600) aceF 3501353..3502957 (-) 1605 WP_022611947.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23439.59 Da        Isoelectric Point: 5.0114

>NTDB_id=99286 QMG95_RS16095 WP_004397669.1 3498924..3499538(+) (opaR) [Vibrio nigripulchritudo strain TUMSAT-V.nig1]
MDTVKKRPRTRLSPQKRKEQLHDIAIEVFAKRGIGRGGHADIAEIAQVSVATVFNYFQTREDLVDEVLSQVEKQYALFIN
ESLKVDATAEENLTSLTQNIIKAALDGTHWMKVWFEWSTSTREEVWPLFLSSNEESQKRIEDMFLTAMERGEVCDEHKAE
DLAKLLHGICYSLYVQANRNPDPEYLEGLVGSFLGMLCIYKQDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=99286 QMG95_RS16095 WP_004397669.1 3498924..3499538(+) (opaR) [Vibrio nigripulchritudo strain TUMSAT-V.nig1]
ATGGATACAGTAAAAAAACGTCCAAGAACAAGGCTATCTCCACAAAAGCGTAAAGAACAGCTTCACGATATTGCTATCGA
AGTGTTCGCAAAACGCGGCATCGGTCGCGGGGGTCACGCTGATATCGCAGAAATTGCACAGGTTTCTGTTGCAACCGTAT
TCAACTACTTCCAAACACGTGAAGACTTGGTTGATGAAGTACTGAGTCAGGTTGAAAAGCAATACGCGTTATTCATCAAT
GAAAGCTTGAAGGTTGACGCAACAGCTGAAGAAAACCTGACAAGCCTAACGCAAAACATCATCAAAGCGGCACTGGATGG
CACTCACTGGATGAAAGTCTGGTTTGAGTGGAGCACATCCACTCGTGAAGAAGTGTGGCCACTGTTCCTGTCTAGCAACG
AAGAGTCACAAAAGCGTATTGAAGACATGTTCCTGACAGCAATGGAGCGTGGTGAAGTATGTGACGAGCATAAAGCCGAA
GACTTAGCGAAACTGCTTCACGGTATCTGCTACTCATTGTACGTACAGGCAAACCGTAACCCGGATCCTGAGTACTTAGA
AGGTTTGGTTGGAAGCTTCCTTGGCATGCTTTGCATTTACAAGCAAGACCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(24-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

61.275

100

0.613
  hapR Vibrio cholerae C6706

59.5

98.039

0.583
  hapR Vibrio cholerae strain A1552

59.5

98.039

0.583

Multiple sequence alignment