Detailed information NTG0099285

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACKTSO_RS09245
• Genome accession: NZ_AP035889
• Coordinates: 1895442..1896437 (+)
• Length: 331 a.a.
• NCBI ID: WP_013746312.1
• Uniprot ID: A0A0A2XTQ1
• Organism: Gallibacterium anatis strain SMUHGa01
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1890442..1901437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKTSO_RS09220 (SMUG_18110)	-	1890504..1891454 (+)	951	WP_039093064.1	tripartite tricarboxylate transporter substrate binding protein	-
ACKTSO_RS09225 (SMUG_18120)	-	1891496..1891942 (+)	447	WP_407902395.1	tripartite tricarboxylate transporter TctB family protein	-
ACKTSO_RS09230 (SMUG_18130)	-	1891952..1893466 (+)	1515	WP_039093062.1	tripartite tricarboxylate transporter permease	-
ACKTSO_RS09235 (SMUG_18140)	-	1893481..1894410 (+)	930	WP_018345930.1	dihydrodipicolinate synthase family protein	-
ACKTSO_RS09240 (SMUG_18150)	rbsK	1894484..1895404 (+)	921	WP_039087018.1	ribokinase	-
ACKTSO_RS09245 (SMUG_18160)	cytR	1895442..1896437 (+)	996	WP_013746312.1	substrate-binding domain-containing protein	Regulator
ACKTSO_RS09250 (SMUG_18170)	-	1896571..1897605 (+)	1035	WP_407902396.1	TAXI family TRAP transporter solute-binding subunit	-
ACKTSO_RS09255 (SMUG_18180)	-	1897608..1898102 (+)	495	WP_407902397.1	DUF1850 domain-containing protein	-
ACKTSO_RS09260 (SMUG_18190)	-	1898071..1900047 (+)	1977	WP_407902398.1	TRAP transporter permease	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 37299.10 Da
• Isoelectric Point: 6.9742

>NTDB_id=99285 ACKTSO_RS09245 WP_013746312.1 1895442..1896437(+) (cytR) [Gallibacterium anatis strain SMUHGa01]
MATMKDIARIAKVSTSTVSHVINNTRYVSDEIREKIMKVVNELNYTPSAVARSLKVKETKTLGMLVTATSNPFFAEVVSG
VEQYCNQHHYNLIISSIDGNEQRLQQNIQTLIQKQVDGLLLMYSDTRHAMVEQLNLNLPIVVMDWWPTELNADKIYENSE
FGAYLATKTLIEQGHKNIAIITGKLDKSLAHNRLLGYQKALQDAHLPINPDWIIESHFDFEGGVEGMKKLLQITPRPTAV
FACSDTIAVGVYQVAWQQGLRIPQDISVIGYDNIMLAQYLTPPLTTIHQPKAELGKLAVETLLERIKSPDLEYKTTMLQP
QLIWRASVAKI

Nucleotide

• Length: 996 bp

>NTDB_id=99285 ACKTSO_RS09245 WP_013746312.1 1895442..1896437(+) (cytR) [Gallibacterium anatis strain SMUHGa01]
ATGGCAACAATGAAGGATATTGCACGGATAGCGAAAGTTTCAACTTCAACCGTATCACACGTAATCAACAATACACGTTA
TGTCAGTGATGAGATACGTGAAAAAATTATGAAGGTTGTCAATGAGTTAAATTATACCCCTTCCGCTGTTGCCCGCAGTT
TAAAAGTAAAAGAGACAAAAACATTGGGGATGTTGGTTACTGCCACCAGCAACCCGTTTTTCGCCGAAGTAGTGAGCGGT
GTGGAACAATATTGCAATCAGCACCACTACAACTTGATCATTTCCAGTATCGATGGCAACGAACAACGCTTGCAGCAAAA
TATTCAAACTTTAATTCAAAAACAGGTGGACGGATTGCTGTTAATGTATTCCGACACTCGCCACGCAATGGTGGAACAAT
TAAATCTAAATTTGCCGATTGTGGTAATGGACTGGTGGCCGACCGAACTAAATGCCGATAAAATTTATGAAAATTCAGAA
TTTGGCGCTTATCTTGCCACAAAAACCTTAATTGAGCAGGGACATAAAAATATCGCCATTATTACGGGTAAATTGGATAA
ATCCTTAGCTCACAACCGTTTGCTCGGTTACCAAAAAGCGTTGCAAGATGCGCATTTGCCGATCAACCCTGATTGGATCA
TTGAGAGCCATTTTGATTTTGAAGGTGGCGTAGAGGGGATGAAAAAATTGTTACAAATTACGCCTCGCCCTACAGCCGTT
TTCGCCTGTAGCGACACCATTGCGGTCGGCGTTTATCAAGTGGCTTGGCAACAAGGATTACGCATTCCACAAGATATTTC
TGTCATCGGTTATGACAATATTATGTTGGCGCAATATCTCACCCCACCACTAACCACAATTCATCAACCTAAAGCAGAAT
TGGGCAAATTAGCCGTGGAAACCTTATTGGAAAGGATTAAATCGCCGGATCTGGAATATAAAACCACAATGTTACAGCCA
CAATTAATTTGGCGTGCTTCAGTCGCTAAAATTTAG

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

3D structure

• AlphaFold DB: A0A0A2XTQ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	36.747	100	0.369
cytR	Vibrio parahaemolyticus RIMD 2210633	36.667	99.698	0.366