Detailed information NTG0992835

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAIA71_RS03630
• Genome accession: NZ_CP154266
• Coordinates: 722503..723372 (-)
• Length: 289 a.a.
• NCBI ID: WP_045488712.1
• Uniprot ID: A0A9X3MI55
• Organism: Vibrio harveyi strain N8T11
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 717503..728372

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAIA71_RS03595 (AAIA71_03595)	rpsP	718306..718554 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
AAIA71_RS03600 (AAIA71_03600)	rimM	718583..719131 (+)	549	WP_005446245.1	ribosome maturation factor RimM	-
AAIA71_RS03605 (AAIA71_03605)	trmD	719159..719902 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AAIA71_RS03610 (AAIA71_03610)	rplS	719944..720297 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
AAIA71_RS03615 (AAIA71_03615)	yacG	720863..721063 (-)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
AAIA71_RS03620 (AAIA71_03620)	zapD	721120..721860 (-)	741	WP_038897986.1	cell division protein ZapD	-
AAIA71_RS03625 (AAIA71_03625)	coaE	721888..722502 (-)	615	WP_050922069.1	dephospho-CoA kinase	-
AAIA71_RS03630 (AAIA71_03630)	pilD	722503..723372 (-)	870	WP_045488712.1	A24 family peptidase	Machinery gene
AAIA71_RS03635 (AAIA71_03635)	pilC	723445..724668 (-)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
AAIA71_RS03640 (AAIA71_03640)	pilB	724702..726387 (-)	1686	WP_005446257.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAIA71_RS03645 (AAIA71_03645)	-	726387..726854 (-)	468	WP_050933475.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AAIA71_RS03650 (AAIA71_03650)	nadC	727119..728006 (-)	888	WP_199449848.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32576.76 Da
• Isoelectric Point: 7.5715

>NTDB_id=992835 AAIA71_RS03630 WP_045488712.1 722503..723372(-) (pilD) [Vibrio harveyi strain N8T11]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=992835 AAIA71_RS03630 WP_045488712.1 722503..723372(-) (pilD) [Vibrio harveyi strain N8T11]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGGATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCCTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGCCCTTACCTTGCAATTGC
AGGATGGGTGAGCTTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436