Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AAIA71_RS01845 | Genome accession | NZ_CP154266 |
| Coordinates | 392356..392949 (+) | Length | 197 a.a. |
| NCBI ID | WP_274792385.1 | Uniprot ID | - |
| Organism | Vibrio harveyi strain N8T11 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 387356..397949
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAIA71_RS01830 (AAIA71_01830) | - | 388039..390609 (-) | 2571 | WP_274792384.1 | PBP1A family penicillin-binding protein | - |
| AAIA71_RS01835 (AAIA71_01835) | pilM | 390788..391804 (+) | 1017 | WP_029789968.1 | type IV pilus assembly protein PilM | Machinery gene |
| AAIA71_RS01840 (AAIA71_01840) | pilN | 391788..392363 (+) | 576 | WP_005451499.1 | PilN domain-containing protein | Machinery gene |
| AAIA71_RS01845 (AAIA71_01845) | pilO | 392356..392949 (+) | 594 | WP_274792385.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AAIA71_RS01850 (AAIA71_01850) | pilP | 392939..393454 (+) | 516 | WP_005451501.1 | pilus assembly protein PilP | Machinery gene |
| AAIA71_RS01855 (AAIA71_01855) | pilQ | 393489..395240 (+) | 1752 | WP_005451505.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| AAIA71_RS01860 (AAIA71_01860) | aroK | 395430..395948 (+) | 519 | WP_005451507.1 | shikimate kinase AroK | - |
| AAIA71_RS01865 (AAIA71_01865) | aroB | 395980..397080 (+) | 1101 | WP_274792386.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23021.56 Da Isoelectric Point: 4.7081
>NTDB_id=992823 AAIA71_RS01845 WP_274792385.1 392356..392949(+) (pilO) [Vibrio harveyi strain N8T11]
MVDWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK
MVDWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=992823 AAIA71_RS01845 WP_274792385.1 392356..392949(+) (pilO) [Vibrio harveyi strain N8T11]
ATGGTTGATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTGGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGCCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAACAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAATAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGTCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA
ATGGTTGATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTGGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGCCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAACAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAATAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGTCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
92.632 |
96.447 |
0.893 |
| pilO | Vibrio cholerae strain A1552 |
71.066 |
100 |
0.711 |