Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   AAIA70_RS14730 Genome accession   NZ_CP154264
Coordinates   3185567..3186082 (-) Length   171 a.a.
NCBI ID   WP_005451501.1    Uniprot ID   A0A9X3RXU4
Organism   Vibrio harveyi strain 45T2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3180567..3191082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIA70_RS14715 (AAIA70_14715) aroB 3181941..3183041 (-) 1101 WP_038898114.1 3-dehydroquinate synthase -
  AAIA70_RS14720 (AAIA70_14720) aroK 3183073..3183591 (-) 519 WP_005451507.1 shikimate kinase AroK -
  AAIA70_RS14725 (AAIA70_14725) pilQ 3183781..3185532 (-) 1752 WP_005451505.1 type IV pilus secretin PilQ family protein Machinery gene
  AAIA70_RS14730 (AAIA70_14730) pilP 3185567..3186082 (-) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  AAIA70_RS14735 (AAIA70_14735) pilO 3186072..3186665 (-) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  AAIA70_RS14740 (AAIA70_14740) pilN 3186658..3187233 (-) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  AAIA70_RS14745 (AAIA70_14745) pilM 3187217..3188233 (-) 1017 WP_343291032.1 type IV pilus assembly protein PilM Machinery gene
  AAIA70_RS14750 (AAIA70_14750) - 3188412..3190982 (+) 2571 WP_050937527.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19142.27 Da        Isoelectric Point: 10.1513

>NTDB_id=992803 AAIA70_RS14730 WP_005451501.1 3185567..3186082(-) (pilP) [Vibrio harveyi strain 45T2]
MRSKSLLMVCIAGVLTACQANDESLTEFIRDVENQARRDVTKLQPVEEYVVVNYEPEILRAPFELPKEATIATQPVARKD
CWQPPSRKRTGKLERFPLAQLRLKGVMGIGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHNYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=992803 AAIA70_RS14730 WP_005451501.1 3185567..3186082(-) (pilP) [Vibrio harveyi strain 45T2]
ATGAGAAGTAAATCTTTGCTGATGGTGTGTATTGCTGGCGTTTTGACTGCCTGCCAAGCCAATGATGAATCACTGACGGA
ATTTATTCGTGACGTGGAGAACCAAGCTCGCCGTGATGTCACCAAACTGCAGCCTGTTGAAGAGTATGTTGTCGTTAACT
ACGAACCCGAAATATTGCGTGCACCTTTCGAATTGCCAAAAGAGGCAACGATTGCAACTCAACCTGTTGCAAGAAAAGAC
TGCTGGCAACCTCCTTCAAGAAAGCGAACTGGCAAATTGGAAAGGTTTCCTCTTGCGCAACTGCGCTTGAAGGGTGTGAT
GGGTATCGGCAGCAGTGTTTCTGGGTTGGTTCAGGCTCCGAATGGCACTGTTTACAAAGTAAAACCAGGTCAATACCTCG
GACGCAACAATGGCAAGGTTACCCATGTATCCCACAACTATTTATTGATTAATGAAACCTTGCCAGACGGTTTGGGCTGT
TGGCAAAAACGCAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

90.058

100

0.901
  pilP Vibrio cholerae strain A1552

59.494

92.398

0.55

Multiple sequence alignment