Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACKTSO_RS08065 Genome accession   NZ_AP035889
Coordinates   1659349..1660557 (-) Length   402 a.a.
NCBI ID   WP_285095951.1    Uniprot ID   -
Organism   Gallibacterium anatis strain SMUHGa01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1654349..1665557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSO_RS08030 (SMUG_15750) fdxH 1654943..1655854 (+) 912 WP_407902307.1 formate dehydrogenase subunit beta -
  ACKTSO_RS08035 (SMUG_15760) - 1655857..1656516 (+) 660 WP_407902308.1 formate dehydrogenase subunit gamma -
  ACKTSO_RS08040 (SMUG_15770) fdhE 1656518..1657441 (+) 924 WP_013746614.1 formate dehydrogenase accessory protein FdhE -
  ACKTSO_RS08045 (SMUG_15780) - 1657507..1657779 (-) 273 WP_039084192.1 GNAT family N-acetyltransferase -
  ACKTSO_RS08050 (SMUG_15790) yacG 1657865..1658083 (-) 219 WP_018345915.1 DNA gyrase inhibitor YacG -
  ACKTSO_RS08055 (SMUG_15800) coaE 1658073..1658705 (-) 633 WP_407902309.1 dephospho-CoA kinase -
  ACKTSO_RS08060 (SMUG_15810) - 1658720..1659352 (-) 633 WP_407902310.1 prepilin peptidase -
  ACKTSO_RS08065 (SMUG_15820) pilC 1659349..1660557 (-) 1209 WP_285095951.1 type II secretion system F family protein Machinery gene
  ACKTSO_RS08070 (SMUG_15830) pilB 1660573..1661982 (-) 1410 WP_021461531.1 GspE/PulE family protein Machinery gene
  ACKTSO_RS08075 (SMUG_15840) pilA 1661999..1662460 (-) 462 WP_407902311.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACKTSO_RS08080 (SMUG_15850) ampD 1662565..1663119 (+) 555 WP_407902312.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACKTSO_RS08085 (SMUG_15860) - 1663206..1663541 (+) 336 WP_013746603.1 hypothetical protein -
  ACKTSO_RS08090 (SMUG_15870) - 1663650..1665044 (+) 1395 WP_407902313.1 chloride channel protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 45769.02 Da        Isoelectric Point: 9.7258

>NTDB_id=99279 ACKTSO_RS08065 WP_285095951.1 1659349..1660557(-) (pilC) [Gallibacterium anatis strain SMUHGa01]
MPEYRWKGKDQFGNSVKGVLIADDREQARQRLFAQGIFLSSLNKNWQFFPTLTLEKQAEFLLQFALLLQAEIPLKPALQM
LQESCDSTSLYQLIGRCLTALNSGFSLSTALKNEKQFLSEQEWQLLYSGEISAQLAKVMKQLADNKLRQLKLRQQMKKIM
FYPLMMLSVSMLLTVLLLLFIVPKFADLYDQQQHALPLITQVLLQSSQFLQNYLWQLLAVFVVGIVALRRCYLMFPSLRR
QLLKLACLVPSIQRLYLQLQQIQFYTILSSMLNSGITLQQSLATFVPQSGYQRSRAATESILAIEAQQCLQSLQAGQRFS
SGLSSRFIPYQAKQMIIIGENSGNLVQMLHYLAEQSQQNLSNQVEVFSKLLEPILMLIIGSIIGVVIAGMYLPIFNMGNV
VL

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=99279 ACKTSO_RS08065 WP_285095951.1 1659349..1660557(-) (pilC) [Gallibacterium anatis strain SMUHGa01]
ATGCCGGAATATCGTTGGAAAGGAAAAGATCAATTTGGTAATAGTGTCAAAGGAGTATTGATTGCGGACGATCGGGAACA
GGCACGTCAACGCCTTTTTGCACAAGGGATCTTTTTATCCTCATTAAATAAAAATTGGCAATTTTTCCCCACACTAACAT
TGGAGAAACAAGCTGAATTTTTATTGCAGTTCGCATTATTGTTGCAGGCAGAGATACCGTTGAAGCCGGCGTTGCAGATG
TTACAGGAAAGTTGTGATTCAACCTCTTTATACCAACTGATAGGACGGTGCTTAACCGCATTGAACAGTGGTTTTTCATT
ATCAACGGCATTAAAAAATGAAAAGCAATTTTTATCAGAACAGGAGTGGCAATTGTTATACAGCGGTGAAATCAGCGCAC
AATTGGCAAAGGTAATGAAACAATTAGCGGATAATAAATTGCGACAACTAAAGTTACGGCAGCAGATGAAAAAAATTATG
TTTTATCCGTTAATGATGTTGTCGGTGTCAATGTTATTAACAGTGTTATTGCTGCTTTTTATTGTGCCTAAATTTGCTGA
TTTATATGATCAACAACAGCACGCCTTACCGTTGATTACACAAGTTTTATTACAGAGCTCGCAATTTTTGCAAAATTATC
TGTGGCAATTATTGGCGGTATTTGTCGTAGGCATTGTGGCGTTACGGCGGTGTTATCTGATGTTTCCTTCATTACGCCGG
CAATTATTGAAATTGGCTTGCTTAGTGCCGTCAATTCAGCGGCTTTATTTGCAGTTACAGCAAATTCAGTTTTATACCAT
TCTCTCTTCAATGTTAAATTCAGGCATAACCTTGCAACAGAGTTTAGCCACCTTTGTGCCTCAATCCGGTTATCAACGAA
GCCGAGCAGCAACAGAATCCATTTTAGCGATCGAAGCACAGCAATGTTTACAGAGCTTGCAGGCAGGGCAACGATTTTCT
TCAGGGTTGAGCAGTCGCTTTATTCCCTATCAGGCAAAACAGATGATTATTATCGGTGAAAATAGCGGCAATTTGGTGCA
GATGTTGCACTATTTAGCGGAACAGAGCCAACAAAATTTATCTAATCAAGTGGAGGTGTTTTCTAAATTATTGGAGCCGA
TATTAATGTTAATAATCGGTTCGATTATTGGTGTGGTTATTGCCGGTATGTATCTGCCGATTTTTAATATGGGCAATGTG
GTTTTATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(264-393)

Type II secretion system (T2SS), protein F (T2SSF)

(60-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

36.118

100

0.366
  pilC Haemophilus influenzae 86-028NP

35.872

100

0.363

Multiple sequence alignment