Detailed information NTG0992649

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHU04_RS20020
• Genome accession: NZ_CP154213
• Coordinates: 4147727..4148527 (+)
• Length: 266 a.a.
• NCBI ID: WP_130943000.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_13377
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4142727..4153527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHU04_RS19985 (AAHU04_19960)	gspH	4142880..4143395 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
AAHU04_RS19990 (AAHU04_19965)	gspI	4143392..4143757 (+)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
AAHU04_RS19995 (AAHU04_19970)	gspJ	4143754..4144350 (+)	597	WP_373640797.1	type II secretion system minor pseudopilin GspJ	-
AAHU04_RS20000 (AAHU04_19975)	gspK	4144347..4145327 (+)	981	WP_004204412.1	type II secretion system minor pseudopilin GspK	-
AAHU04_RS20005 (AAHU04_19980)	gspL	4145320..4146516 (+)	1197	WP_373640799.1	type II secretion system protein GspL	-
AAHU04_RS20010 (AAHU04_19985)	-	4146509..4146994 (+)	486	WP_096833520.1	type II secretion system protein M	-
AAHU04_RS20015 (AAHU04_19990)	-	4146984..4147712 (+)	729	WP_065878627.1	type II secretion system protein N	-
AAHU04_RS20020 (AAHU04_19995)	pilD	4147727..4148527 (+)	801	WP_130943000.1	A24 family peptidase	Machinery gene
AAHU04_RS20025 (AAHU04_20000)	hrpB	4148575..4151004 (-)	2430	WP_023319752.1	ATP-dependent helicase HrpB	-
AAHU04_RS20030 (AAHU04_20005)	thpR	4151077..4151613 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHU04_RS20035 (AAHU04_20010)	sfsA	4151613..4152329 (+)	717	WP_023319751.1	DNA/RNA nuclease SfsA	-
AAHU04_RS20040 (AAHU04_20015)	dksA	4152492..4152947 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29304.85 Da
• Isoelectric Point: 8.8894

>NTDB_id=992649 AAHU04_RS20020 WP_130943000.1 4147727..4148527(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_13377]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLVASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=992649 AAHU04_RS20020 WP_130943000.1 4147727..4148527(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_13377]
ATGACGACATTAGCCGCTTTATCGCTGCATTTCCCTCTTATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATTCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGGTCGCCTCGGCCAGCGGGCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.678	98.12	0.429