Detailed information NTG0992578

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHU26_RS20550
• Genome accession: NZ_CP154166
• Coordinates: 4225250..4226050 (+)
• Length: 266 a.a.
• NCBI ID: WP_048323011.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_13757
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4220250..4231050

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHU26_RS20515 (AAHU26_20490)	gspH	4220403..4220918 (+)	516	WP_017901154.1	type II secretion system minor pseudopilin GspH	-
AAHU26_RS20520 (AAHU26_20495)	gspI	4220915..4221280 (+)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
AAHU26_RS20525 (AAHU26_20500)	gspJ	4221277..4221873 (+)	597	WP_048323018.1	type II secretion system minor pseudopilin GspJ	-
AAHU26_RS20530 (AAHU26_20505)	gspK	4221870..4222850 (+)	981	WP_004204412.1	type II secretion system minor pseudopilin GspK	-
AAHU26_RS20535 (AAHU26_20510)	gspL	4222843..4224039 (+)	1197	WP_048323014.1	type II secretion system protein GspL	-
AAHU26_RS20540 (AAHU26_20515)	-	4224032..4224517 (+)	486	WP_004204409.1	type II secretion system protein M	-
AAHU26_RS20545 (AAHU26_20520)	-	4224507..4225235 (+)	729	WP_048323012.1	type II secretion system protein N	-
AAHU26_RS20550 (AAHU26_20525)	pilD	4225250..4226050 (+)	801	WP_048323011.1	A24 family peptidase	Machinery gene
AAHU26_RS20555 (AAHU26_20530)	hrpB	4226098..4228527 (-)	2430	WP_048323009.1	ATP-dependent helicase HrpB	-
AAHU26_RS20560 (AAHU26_20535)	thpR	4228600..4229136 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHU26_RS20565 (AAHU26_20540)	sfsA	4229136..4229852 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
AAHU26_RS20570 (AAHU26_20545)	dksA	4230015..4230470 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29318.87 Da
• Isoelectric Point: 8.8894

>NTDB_id=992578 AAHU26_RS20550 WP_048323011.1 4225250..4226050(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_13757]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLVSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLVASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=992578 AAHU26_RS20550 WP_048323011.1 4225250..4226050(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_13757]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTAATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCTTGTCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGGTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTCAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTTTTGGTCGCCTCGGCCAGCGGGCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.678	98.12	0.429