Detailed information NTG0992531

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHU34_RS20960
• Genome accession: NZ_CP154149
• Coordinates: 4273057..4273857 (+)
• Length: 266 a.a.
• NCBI ID: WP_064189486.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_14164
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4268057..4278857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHU34_RS20925 (AAHU34_20880)	gspH	4268210..4268725 (+)	516	WP_053810751.1	type II secretion system minor pseudopilin GspH	-
AAHU34_RS20930 (AAHU34_20885)	gspI	4268722..4269087 (+)	366	WP_053810752.1	type II secretion system minor pseudopilin GspI	-
AAHU34_RS20935 (AAHU34_20890)	gspJ	4269084..4269680 (+)	597	WP_373856337.1	type II secretion system minor pseudopilin GspJ	-
AAHU34_RS20940 (AAHU34_20895)	gspK	4269677..4270657 (+)	981	WP_373856338.1	type II secretion system minor pseudopilin GspK	-
AAHU34_RS20945 (AAHU34_20900)	gspL	4270650..4271846 (+)	1197	WP_064187719.1	type II secretion system protein GspL	-
AAHU34_RS20950 (AAHU34_20905)	-	4271839..4272324 (+)	486	WP_043521988.1	type II secretion system protein M	-
AAHU34_RS20955 (AAHU34_20910)	-	4272314..4273042 (+)	729	WP_064189487.1	type II secretion system protein N	-
AAHU34_RS20960 (AAHU34_20915)	pilD	4273057..4273857 (+)	801	WP_064189486.1	A24 family peptidase	Machinery gene
AAHU34_RS20965 (AAHU34_20920)	hrpB	4273905..4276334 (-)	2430	WP_373856339.1	ATP-dependent helicase HrpB	-
AAHU34_RS20970 (AAHU34_20925)	thpR	4276407..4276943 (+)	537	WP_049116602.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHU34_RS20975 (AAHU34_20930)	sfsA	4276943..4277659 (+)	717	WP_023292014.1	DNA/RNA nuclease SfsA	-
AAHU34_RS20980 (AAHU34_20935)	dksA	4277822..4278277 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29386.92 Da
• Isoelectric Point: 8.8894

>NTDB_id=992531 AAHU34_RS20960 WP_064189486.1 4273057..4273857(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_14164]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPMTELTTSLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=992531 AAHU34_RS20960 WP_064189486.1 4273057..4273857(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_14164]
ATGACGACATTAGCCGCTTTATCGCTGCATTTCCCCCTTGTCTGGTATGGTTTTCTGCTGCTTTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAAACCGCGGATGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCTTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGATGACCGAGCTGACCACCAGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCGCCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	42.529	98.12	0.417