Detailed information NTG0992484

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHV21_RS21655
• Genome accession: NZ_CP153996
• Coordinates: 4434865..4435665 (+)
• Length: 266 a.a.
• NCBI ID: WP_023322076.1
• Uniprot ID: -
• Organism: Klebsiella variicola subsp. variicola strain KP_NORM_BLD_60778
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4429865..4440665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHV21_RS21620 (AAHV21_21590)	gspH	4430018..4430533 (+)	516	WP_046882113.1	type II secretion system minor pseudopilin GspH	-
AAHV21_RS21625 (AAHV21_21595)	gspI	4430530..4430895 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AAHV21_RS21630 (AAHV21_21600)	gspJ	4430892..4431488 (+)	597	WP_032736669.1	type II secretion system minor pseudopilin GspJ	-
AAHV21_RS21635 (AAHV21_21605)	gspK	4431485..4432465 (+)	981	WP_012542824.1	type II secretion system minor pseudopilin GspK	-
AAHV21_RS21640 (AAHV21_21610)	gspL	4432458..4433654 (+)	1197	WP_032736668.1	type II secretion system protein GspL	-
AAHV21_RS21645 (AAHV21_21615)	-	4433647..4434132 (+)	486	WP_012968921.1	type II secretion system protein M	-
AAHV21_RS21650 (AAHV21_21620)	-	4434122..4434868 (+)	747	WP_072124978.1	type II secretion system protein N	-
AAHV21_RS21655 (AAHV21_21625)	pilD	4434865..4435665 (+)	801	WP_023322076.1	A24 family peptidase	Machinery gene
AAHV21_RS21660 (AAHV21_21630)	hrpB	4435712..4438141 (-)	2430	WP_167341441.1	ATP-dependent helicase HrpB	-
AAHV21_RS21665 (AAHV21_21635)	thpR	4438214..4438750 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHV21_RS21670 (AAHV21_21640)	sfsA	4438750..4439466 (+)	717	WP_008807388.1	DNA/RNA nuclease SfsA	-
AAHV21_RS21675 (AAHV21_21645)	dksA	4439629..4440084 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29445.19 Da
• Isoelectric Point: 8.7151

>NTDB_id=992484 AAHV21_RS21655 WP_023322076.1 4434865..4435665(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_60778]
MTILTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=992484 AAHV21_RS21655 WP_023322076.1 4434865..4435665(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_60778]
ATGACGATATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425