Detailed information NTG0992461

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHV22_RS21470
• Genome accession: NZ_CP153995
• Coordinates: 4411562..4412362 (+)
• Length: 266 a.a.
• NCBI ID: WP_023292017.1
• Uniprot ID: A0A483KIE1
• Organism: Klebsiella quasipneumoniae subsp. quasipneumoniae strain KP_NORM_BLD_60803
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4406562..4417362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHV22_RS21435 (AAHV22_21405)	gspH	4406715..4407230 (+)	516	WP_102002743.1	type II secretion system minor pseudopilin GspH	-
AAHV22_RS21440 (AAHV22_21410)	gspI	4407227..4407592 (+)	366	WP_211775400.1	type II secretion system minor pseudopilin GspI	-
AAHV22_RS21445 (AAHV22_21415)	gspJ	4407589..4408185 (+)	597	WP_023292022.1	type II secretion system minor pseudopilin GspJ	-
AAHV22_RS21450 (AAHV22_21420)	gspK	4408182..4409162 (+)	981	WP_373638413.1	type II secretion system minor pseudopilin GspK	-
AAHV22_RS21455 (AAHV22_21425)	gspL	4409155..4410351 (+)	1197	WP_048296714.1	type II secretion system protein GspL	-
AAHV22_RS21460 (AAHV22_21430)	-	4410344..4410829 (+)	486	WP_373638414.1	type II secretion system protein M	-
AAHV22_RS21465 (AAHV22_21435)	-	4410819..4411547 (+)	729	WP_023292018.1	type II secretion system protein N	-
AAHV22_RS21470 (AAHV22_21440)	pilD	4411562..4412362 (+)	801	WP_023292017.1	A24 family peptidase	Machinery gene
AAHV22_RS21475 (AAHV22_21445)	hrpB	4412410..4414839 (-)	2430	WP_064155382.1	ATP-dependent helicase HrpB	-
AAHV22_RS21480 (AAHV22_21450)	thpR	4414912..4415448 (+)	537	WP_023292015.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHV22_RS21485 (AAHV22_21455)	sfsA	4415448..4416164 (+)	717	WP_023292014.1	DNA/RNA nuclease SfsA	-
AAHV22_RS21490 (AAHV22_21460)	dksA	4416327..4416782 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29274.82 Da
• Isoelectric Point: 8.8894

>NTDB_id=992461 AAHV22_RS21470 WP_023292017.1 4411562..4412362(+) (pilD) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain KP_NORM_BLD_60803]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDEPITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELATGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLLASASGLAWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=992461 AAHV22_RS21470 WP_023292017.1 4411562..4412362(+) (pilD) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain KP_NORM_BLD_60803]
ATGACGACATTAGCCGCATTATCGCTGCATTTTCCCCTTGTCTGGTATGGTTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGACCCAAACCGCGGACGACGAGCCGATAACCCTCAGCA
CGCCGGGCTCATCCTGCCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGGCTACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCCCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCAGCGGGCTGGCGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

3D structure

• AlphaFold DB: A0A483KIE1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425