Detailed information NTG0992413

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHV27_RS22165
• Genome accession: NZ_CP153984
• Coordinates: 4575894..4576694 (+)
• Length: 266 a.a.
• NCBI ID: WP_008807384.1
• Uniprot ID: A0A0J4LMF2
• Organism: Klebsiella variicola subsp. variicola strain KP_NORM_BLD_61444
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4570894..4581694

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHV27_RS22130 (AAHV27_22115)	gspH	4571047..4571562 (+)	516	WP_049139125.1	type II secretion system minor pseudopilin GspH	-
AAHV27_RS22135 (AAHV27_22120)	gspI	4571559..4571924 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AAHV27_RS22140 (AAHV27_22125)	gspJ	4571921..4572517 (+)	597	WP_101827328.1	type II secretion system minor pseudopilin GspJ	-
AAHV27_RS22145 (AAHV27_22130)	gspK	4572514..4573494 (+)	981	WP_196093141.1	type II secretion system minor pseudopilin GspK	-
AAHV27_RS22150 (AAHV27_22135)	gspL	4573487..4574683 (+)	1197	WP_196093142.1	type II secretion system protein GspL	-
AAHV27_RS22155 (AAHV27_22140)	-	4574676..4575161 (+)	486	WP_012968921.1	type II secretion system protein M	-
AAHV27_RS22160 (AAHV27_22145)	-	4575151..4575897 (+)	747	WP_188203574.1	type II secretion system protein N	-
AAHV27_RS22165 (AAHV27_22150)	pilD	4575894..4576694 (+)	801	WP_008807384.1	A24 family peptidase	Machinery gene
AAHV27_RS22170 (AAHV27_22155)	hrpB	4576741..4579170 (-)	2430	WP_032740432.1	ATP-dependent helicase HrpB	-
AAHV27_RS22175 (AAHV27_22160)	thpR	4579243..4579779 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHV27_RS22180 (AAHV27_22165)	sfsA	4579779..4580495 (+)	717	WP_022066362.1	DNA/RNA nuclease SfsA	-
AAHV27_RS22185 (AAHV27_22170)	dksA	4580658..4581113 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29433.14 Da
• Isoelectric Point: 8.7151

>NTDB_id=992413 AAHV27_RS22165 WP_008807384.1 4575894..4576694(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_61444]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=992413 AAHV27_RS22165 WP_008807384.1 4575894..4576694(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_61444]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCACTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

3D structure

• AlphaFold DB: A0A0J4LMF2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425