Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ACKTXI_RS29555 Genome accession   NZ_AP035884
Coordinates   6622768..6623412 (+) Length   214 a.a.
NCBI ID   WP_030088560.1    Uniprot ID   A0ABW2MAK6
Organism   Streptomyces sp. CMC78     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6617768..6628412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTXI_RS29535 (SCMC78_59650) - 6618072..6618809 (-) 738 WP_408054481.1 transglycosylase SLT domain-containing protein -
  ACKTXI_RS29540 (SCMC78_59660) - 6619082..6620665 (-) 1584 WP_406189758.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  ACKTXI_RS29545 (SCMC78_59670) - 6620662..6621387 (-) 726 WP_193462392.1 SDR family NAD(P)-dependent oxidoreductase -
  ACKTXI_RS29550 (SCMC78_59680) - 6621630..6622775 (+) 1146 WP_319601722.1 GAF domain-containing sensor histidine kinase -
  ACKTXI_RS29555 (SCMC78_59690) vraR 6622768..6623412 (+) 645 WP_030088560.1 response regulator Regulator
  ACKTXI_RS29560 (SCMC78_59700) - 6623559..6623810 (+) 252 WP_030627315.1 chaplin -
  ACKTXI_RS29565 (SCMC78_59710) - 6624190..6624981 (-) 792 WP_398690971.1 hypothetical protein -
  ACKTXI_RS29570 (SCMC78_59720) - 6625114..6625911 (+) 798 WP_086779473.1 ABC transporter ATP-binding protein -
  ACKTXI_RS29575 (SCMC78_59730) - 6626031..6626459 (+) 429 WP_408054482.1 NfeD family protein -
  ACKTXI_RS29580 (SCMC78_59740) - 6626625..6627617 (+) 993 WP_103538044.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23085.34 Da        Isoelectric Point: 5.3797

>NTDB_id=99239 ACKTXI_RS29555 WP_030088560.1 6622768..6623412(+) (vraR) [Streptomyces sp. CMC78]
MADKIIRVLLVDDHQVVRRGLRTFLEIQEDIEVVGEASDGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELDNPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQDDAGTGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=99239 ACKTXI_RS29555 WP_030088560.1 6622768..6623412(+) (vraR) [Streptomyces sp. CMC78]
GTGGCTGACAAGATCATCAGGGTGCTGCTGGTCGACGACCATCAGGTGGTCCGCCGAGGACTGCGTACGTTCCTGGAGAT
CCAGGAGGACATAGAGGTCGTCGGCGAGGCGTCCGACGGCGCGGAGGGCGTGGCCCGGACCGAGGAGCTCCGCCCCGACG
TCGTGCTGATGGACATCAAGATGCCCGGCACCGACGGCATCGAGGCGCTGCGCCGCCTGCGCGAGCTCGACAACCCGGCG
AAGGTCCTCATCGTCACCAGCTTCACCGAACAGCGCACGGTGGTCCCCGCCCTGCGCGCCGGAGCCTCCGGTTACGTCTA
CAAGGACGTCGACCCGGACGCCCTGGCCGGCGCCATCCGCTCGGTCCACGCCGGTCATGTCCTGCTCCAGCCGGAGGTCG
CCGGCGCACTCCTCGCCCAGGACGACGCGGGCACCGGCACGGGCCGGGGGAGCACGCTCACCGAACGGGAACGCGAAGTC
CTCGGCCTCATCGCGGACGGCCGTTCCAACCGCGAGATCGCCCGCGCACTCGTCCTCTCGGAGAAGACGGTCAAGACGCA
CGTCTCGAACATCCTGATGAAGCTCGACCTGTCCGACCGGACCCAGGCGGCGCTCTGGGCGGTACGCCATGGAGCGGCGG
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.411

96.729

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407

Multiple sequence alignment