Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PADK1_RS02165 Genome accession   NZ_LN870292
Coordinates   455789..456196 (+) Length   135 a.a.
NCBI ID   WP_003084583.1    Uniprot ID   A0A0H2ZL28
Organism   Pseudomonas aeruginosa DK1 substr. NH57388A     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 450789..461196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PADK1_RS02135 (PADK1_00416) - 450837..451841 (-) 1005 WP_003084569.1 aspartate carbamoyltransferase catalytic subunit -
  PADK1_RS02140 (PADK1_00417) pyrR 451865..452377 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PADK1_RS02145 (PADK1_00418) ruvX 452489..452923 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PADK1_RS02150 (PADK1_00419) - 452923..453492 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  PADK1_RS02155 (PADK1_00420) - 453541..454434 (-) 894 WP_003162015.1 energy transducer TonB -
  PADK1_RS02160 (PADK1_00421) gshB 454581..455534 (-) 954 WP_003100943.1 glutathione synthase -
  PADK1_RS02165 (PADK1_00422) pilG 455789..456196 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PADK1_RS02170 (PADK1_00423) pilH 456243..456608 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PADK1_RS02175 (PADK1_00424) - 456659..457195 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PADK1_RS02180 (PADK1_00425) pilJ 457280..459328 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PADK1_RS02185 (PADK1_00426) pilK 459389..460264 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14718.11 Da        Isoelectric Point: 7.1340

>NTDB_id=992350 PADK1_RS02165 WP_003084583.1 455789..456196(+) (pilG) [Pseudomonas aeruginosa DK1 substr. NH57388A]
MEQQSDGLKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKAHVPSFTPVDAVS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=992350 PADK1_RS02165 WP_003084583.1 455789..456196(+) (pilG) [Pseudomonas aeruginosa DK1 substr. NH57388A]
ATGGAACAGCAATCCGACGGTTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGTCGCACCGCCGAAACACTGCT
GAAAAAGGTCGGTTGCGACGTGATCACGGCAATCGACGGCTTCGATGCCCTGGCGAAGATCGCCGATACCCATCCGAACA
TCATTTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAACAACAGCGCGTTCAAG
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCTCCGACCAGTA
CCTCACCAAGCCGTTCAGCAAGGAAGAGCTGCTGGGCGCGATCAAGGCACACGTACCCAGCTTCACCCCGGTGGACGCCG
TTTCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZL28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.803

94.074

0.704
  vicR Streptococcus mutans UA159

44.444

86.667

0.385