Detailed information NTG0992343

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHV35_RS21910
• Genome accession: NZ_CP153962
• Coordinates: 4478727..4479527 (+)
• Length: 266 a.a.
• NCBI ID: WP_023322076.1
• Uniprot ID: -
• Organism: Klebsiella variicola subsp. variicola strain KP_NORM_BLD_62512
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4473727..4484527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHV35_RS21875 (AAHV35_21880)	gspH	4473880..4474395 (+)	516	WP_008807378.1	type II secretion system minor pseudopilin GspH	-
AAHV35_RS21880 (AAHV35_21885)	gspI	4474392..4474757 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AAHV35_RS21885 (AAHV35_21890)	gspJ	4474754..4475350 (+)	597	WP_032731630.1	type II secretion system minor pseudopilin GspJ	-
AAHV35_RS21890 (AAHV35_21895)	gspK	4475347..4476327 (+)	981	WP_012542824.1	type II secretion system minor pseudopilin GspK	-
AAHV35_RS21895 (AAHV35_21900)	gspL	4476320..4477516 (+)	1197	WP_039102856.1	type II secretion system protein GspL	-
AAHV35_RS21900 (AAHV35_21905)	-	4477509..4477994 (+)	486	WP_012968921.1	type II secretion system protein M	-
AAHV35_RS21905 (AAHV35_21910)	-	4477984..4478730 (+)	747	WP_070612007.1	type II secretion system protein N	-
AAHV35_RS21910 (AAHV35_21915)	pilD	4478727..4479527 (+)	801	WP_023322076.1	A24 family peptidase	Machinery gene
AAHV35_RS21915 (AAHV35_21920)	hrpB	4479574..4482003 (-)	2430	WP_032732528.1	ATP-dependent helicase HrpB	-
AAHV35_RS21920 (AAHV35_21925)	thpR	4482076..4482612 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHV35_RS21925 (AAHV35_21930)	sfsA	4482612..4483328 (+)	717	WP_022066362.1	DNA/RNA nuclease SfsA	-
AAHV35_RS21930 (AAHV35_21935)	dksA	4483491..4483946 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29445.19 Da
• Isoelectric Point: 8.7151

>NTDB_id=992343 AAHV35_RS21910 WP_023322076.1 4478727..4479527(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_62512]
MTILTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=992343 AAHV35_RS21910 WP_023322076.1 4478727..4479527(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_62512]
ATGACGATATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425