Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KKKWG1_RS01965 Genome accession   NZ_LN869922
Coordinates   380362..380949 (+) Length   195 a.a.
NCBI ID   WP_026036189.1    Uniprot ID   -
Organism   Kingella kingae strain KWG1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 375362..385949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKKWG1_RS01940 (KKKWG1_0405) - 376207..377136 (-) 930 WP_060536932.1 nuclease-related domain-containing protein -
  KKKWG1_RS01945 (KKKWG1_0406) - 377274..378038 (-) 765 WP_060536933.1 ABC transporter permease -
  KKKWG1_RS01950 (KKKWG1_0407) - 378035..378943 (-) 909 WP_060536934.1 ABC transporter ATP-binding protein -
  KKKWG1_RS11230 (KKKWG1_0408) - 379073..379219 (-) 147 WP_019388933.1 hypothetical protein -
  KKKWG1_RS01960 (KKKWG1_0409) - 379574..380356 (+) 783 WP_019388932.1 hypothetical protein -
  KKKWG1_RS01965 (KKKWG1_0410) ruvA 380362..380949 (+) 588 WP_026036189.1 Holliday junction branch migration protein RuvA Machinery gene
  KKKWG1_RS01970 (KKKWG1_0411) - 380960..382366 (+) 1407 WP_060536935.1 efflux transporter outer membrane subunit -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21029.34 Da        Isoelectric Point: 5.7357

>NTDB_id=992290 KKKWG1_RS01965 WP_026036189.1 380362..380949(+) (ruvA) [Kingella kingae strain KWG1]
MISRLRGMLLEKMPPQIVIDANGVGYELDVSMQTFYALPALGETVQLYTHLVVREDAHLLFGFGDASERTTFRQLIKVSG
IGAKTALGILSAMTADELAQAIANEDVKRLSSAPGIGKKTAERMILELRGKLAHSSLGDLALFTPVADTDNRTDVVSTLL
ALGYSEREAQAACKSLPNDVEVGEGVRLALKQLMK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=992290 KKKWG1_RS01965 WP_026036189.1 380362..380949(+) (ruvA) [Kingella kingae strain KWG1]
ATGATTAGTAGATTGCGTGGTATGTTGCTGGAAAAAATGCCACCACAAATTGTGATAGATGCAAACGGCGTGGGCTACGA
GTTGGACGTGTCTATGCAAACGTTTTACGCCTTGCCTGCTTTGGGCGAAACGGTGCAGCTTTATACGCATTTGGTGGTGC
GTGAAGACGCGCATTTGCTGTTTGGTTTTGGCGATGCGAGCGAGCGGACGACTTTTCGTCAGTTGATTAAAGTGAGCGGT
ATTGGCGCAAAAACTGCGTTGGGCATTTTGTCGGCGATGACGGCTGATGAATTGGCACAGGCGATTGCTAACGAAGATGT
GAAACGTTTGTCGTCTGCGCCAGGTATCGGCAAAAAAACGGCAGAACGCATGATTTTGGAATTGCGCGGTAAATTAGCAC
ACAGTAGTCTGGGCGATTTGGCTTTGTTTACGCCTGTTGCGGACACGGATAATCGCACCGATGTGGTCAGCACCTTGCTG
GCGTTGGGTTATTCCGAGCGTGAAGCGCAAGCAGCCTGCAAATCGTTGCCCAACGATGTGGAAGTGGGCGAGGGCGTGCG
TTTGGCGTTGAAACAGTTAATGAAGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(150-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

36.869

100

0.374
  ruvA Streptococcus pneumoniae D39

36.869

100

0.374
  ruvA Streptococcus pneumoniae TIGR4

36.364

100

0.369