Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACKTXI_RS20490 Genome accession   NZ_AP035884
Coordinates   4586769..4588190 (-) Length   473 a.a.
NCBI ID   WP_319601574.1    Uniprot ID   -
Organism   Streptomyces sp. CMC78     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4581769..4593190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTXI_RS20470 (SCMC78_41490) - 4582424..4583095 (-) 672 WP_381764508.1 SigE family RNA polymerase sigma factor -
  ACKTXI_RS20475 (SCMC78_41500) - 4583254..4584168 (-) 915 WP_397724463.1 A/G-specific adenine glycosylase -
  ACKTXI_RS20480 (SCMC78_41510) - 4584471..4585211 (+) 741 WP_408054055.1 hypothetical protein -
  ACKTXI_RS20485 (SCMC78_41520) disA 4585564..4586688 (-) 1125 WP_006125491.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ACKTXI_RS20490 (SCMC78_41530) radA/sms 4586769..4588190 (-) 1422 WP_319601574.1 DNA repair protein RadA Machinery gene
  ACKTXI_RS20495 (SCMC78_41540) - 4588424..4590304 (+) 1881 WP_408054056.1 BACON domain-containing protein -
  ACKTXI_RS20500 (SCMC78_41550) - 4590349..4591209 (-) 861 WP_319601435.1 hypothetical protein -
  ACKTXI_RS20505 (SCMC78_41560) - 4591249..4592199 (+) 951 WP_319601434.1 Ppx/GppA phosphatase family protein -
  ACKTXI_RS20510 (SCMC78_41570) - 4592293..4593168 (+) 876 WP_408054897.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49804.00 Da        Isoelectric Point: 8.4942

>NTDB_id=99217 ACKTXI_RS20490 WP_319601574.1 4586769..4588190(-) (radA/sms) [Streptomyces sp. CMC78]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIKAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRVLPRRSRQEAPQPRQEDNARR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=99217 ACKTXI_RS20490 WP_319601574.1 4586769..4588190(-) (radA/sms) [Streptomyces sp. CMC78]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCGCCCGCCGTGCGCACCACCGCGGCGG
GCCGGGTCTCCACGGCGGCGCTGCCGATCGGCCAGGTCGACAGCCGCACGGCCACCGCCCGCTCGACCGGCGTCGGCGAG
CTGGACCGGGTGCTCGGCGGCGGTCTGGTGCCGGGCGCGGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGTTGCGGGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCCGCGGAGACCGATCTGTCGGCGGTG
CTCGGCCATCTGGACGCGGTGAAGCCCTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCCCCCGAGATCGACGG
CGCGCCCGGCGGAATGGCCCAGGTCCGGGAGGTCGCCGGGGCGCTGATCCGGGCGTCCAAGGAGCGCGGGATGGCCACGC
TGCTGGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCGTCAAGAATCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGTCTCGCCGACCCCTCGGGCCTCTTCCTGACCCGCCGCGACGTGGCGGTGC
CGGGCACCTGCCTCACCGTGACGCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGTGTGAAGCTCACCGAGCCCGCCGCCGACC
TGGCCATCGCGCTCGCGCTGGCCAGCGCCGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGAAGGGTCACCGGGGTGCAGCGGAGGCTGGCCGAGGCACACCGGCTGGGCTTCACCCACGCGCT
CGTTCCGACCGATCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGATGCTCTGCGGGTCC
TCCCGCGCCGGTCTCGTCAAGAGGCGCCGCAGCCTCGTCAGGAAGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

AAA domain (AAA_25)

(85-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

95.772

0.419
  radA Streptococcus mitis SK321

44.289

90.698

0.402
  radA Streptococcus pneumoniae Rx1

44.289

90.698

0.402
  radA Streptococcus pneumoniae D39

44.289

90.698

0.402
  radA Streptococcus pneumoniae R6

44.289

90.698

0.402
  radA Streptococcus pneumoniae TIGR4

44.289

90.698

0.402
  radA Streptococcus mitis NCTC 12261

44.289

90.698

0.402

Multiple sequence alignment