Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SABB155_RS04680 Genome accession   NZ_LN854556
Coordinates   959896..960465 (-) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BB155     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 954896..965465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SABB155_RS04655 (SABB155_08680) - 954902..956260 (+) 1359 WP_054190348.1 TrkH family potassium uptake protein -
  SABB155_RS04660 (SABB155_08690) - 956399..957910 (+) 1512 WP_054190347.1 bifunctional metallophosphatase/5'-nucleotidase -
  SABB155_RS04665 (SABB155_08700) - 958057..959373 (-) 1317 WP_054190390.1 ISL3 family transposase -
  SABB155_RS04680 (SABB155_08710) comK/comK1 959896..960465 (-) 570 WP_000287265.1 competence protein ComK Regulator
  SABB155_RS04685 (SABB155_08720) - 960675..960893 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  SABB155_RS04690 (SABB155_08730) - 960982..961968 (-) 987 WP_054190346.1 lipoate--protein ligase -
  SABB155_RS04695 (SABB155_08740) - 962167..962343 (+) 177 WP_000214898.1 YkvS family protein -
  SABB155_RS04700 (SABB155_08750) - 962358..962960 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  SABB155_RS14935 - 963275..963337 (+) 63 WP_240785570.1 putative holin-like toxin -
  SABB155_RS04710 (SABB155_08760) - 963975..964259 (+) 285 WP_054190345.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=992067 SABB155_RS04680 WP_000287265.1 959896..960465(-) (comK/comK1) [Staphylococcus aureus strain BB155]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=992067 SABB155_RS04680 WP_000287265.1 959896..960465(-) (comK/comK1) [Staphylococcus aureus strain BB155]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterProScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1
  comK/comK1 Staphylococcus aureus N315

100

100

1