Detailed information NTG0992061

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHY53_RS21420
• Genome accession: NZ_CP153727
• Coordinates: 4396961..4397761 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain Kpn49
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4391961..4402761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHY53_RS21385 (AAHY53_21340)	gspH	4392117..4392632 (+)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-
AAHY53_RS21390 (AAHY53_21345)	gspI	4392629..4392994 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAHY53_RS21395 (AAHY53_21350)	gspJ	4392991..4393587 (+)	597	WP_032419387.1	type II secretion system minor pseudopilin GspJ	-
AAHY53_RS21400 (AAHY53_21355)	gspK	4393584..4394570 (+)	987	WP_077258397.1	type II secretion system minor pseudopilin GspK	-
AAHY53_RS21405 (AAHY53_21360)	gspL	4394557..4395750 (+)	1194	WP_032416685.1	type II secretion system protein GspL	-
AAHY53_RS21410 (AAHY53_21365)	-	4395743..4396228 (+)	486	WP_032411549.1	type II secretion system protein M	-
AAHY53_RS21415 (AAHY53_21370)	-	4396218..4396964 (+)	747	WP_004145897.1	type II secretion system protein N	-
AAHY53_RS21420 (AAHY53_21375)	pilD	4396961..4397761 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
AAHY53_RS21425 (AAHY53_21380)	hrpB	4397809..4400238 (-)	2430	WP_117101018.1	ATP-dependent helicase HrpB	-
AAHY53_RS21430 (AAHY53_21385)	thpR	4400311..4400847 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHY53_RS21435 (AAHY53_21390)	sfsA	4400847..4401563 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAHY53_RS21440 (AAHY53_21395)	dksA	4401726..4402181 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=992061 AAHY53_RS21420 WP_004191960.1 4396961..4397761(+) (pilD) [Klebsiella pneumoniae strain Kpn49]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=992061 AAHY53_RS21420 WP_004191960.1 4396961..4397761(+) (pilD) [Klebsiella pneumoniae strain Kpn49]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421