Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   A66_RS12580 Genome accession   NZ_LN847353
Coordinates   1315105..1315827 (-) Length   240 a.a.
NCBI ID   WP_225791125.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain A66     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310105..1320827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A66_RS06770 (A66_01359) - 1312679..1313845 (-) 1167 WP_053039670.1 MalY/PatB family protein -
  A66_RS06775 (A66_01360) - 1313853..1314947 (-) 1095 WP_000031964.1 cystathionine gamma-synthase -
  A66_RS12580 rcrP 1315105..1315827 (-) 723 WP_225791125.1 ATP-binding cassette domain-containing protein Regulator
  A66_RS12585 - 1316014..1316787 (-) 774 Protein_1336 ABC transporter ATP-binding protein -
  A66_RS06785 (A66_01362) amiA 1316959..1318917 (-) 1959 WP_000748881.1 peptide ABC transporter substrate-binding protein Regulator
  A66_RS06790 (A66_01363) - 1319120..1320742 (-) 1623 WP_024478395.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27242.08 Da        Isoelectric Point: 5.2120

>NTDB_id=992035 A66_RS12580 WP_225791125.1 1315105..1315827(-) (rcrP) [Streptococcus pneumoniae strain A66]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKISWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGRSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDYIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=992035 A66_RS12580 WP_225791125.1 1315105..1315827(-) (rcrP) [Streptococcus pneumoniae strain A66]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCTCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCGAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTACTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTATATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367
  comA/nlmT Streptococcus mutans UA159

37.826

95.833

0.362
  comA Streptococcus mitis SK321

37.179

97.5

0.362