Detailed information NTG0991896

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHZ17_RS21290
• Genome accession: NZ_CP153703
• Coordinates: 4325896..4326696 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain Kpn5827
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4320896..4331696

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHZ17_RS21255 (AAHZ17_21215)	gspH	4321052..4321567 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
AAHZ17_RS21260 (AAHZ17_21220)	gspI	4321564..4321929 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAHZ17_RS21265 (AAHZ17_21225)	gspJ	4321926..4322522 (+)	597	WP_373854573.1	type II secretion system minor pseudopilin GspJ	-
AAHZ17_RS21270 (AAHZ17_21230)	gspK	4322519..4323505 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
AAHZ17_RS21275 (AAHZ17_21235)	gspL	4323492..4324685 (+)	1194	WP_029602501.1	type II secretion system protein GspL	-
AAHZ17_RS21280 (AAHZ17_21240)	-	4324678..4325163 (+)	486	WP_058229142.1	type II secretion system protein M	-
AAHZ17_RS21285 (AAHZ17_21245)	-	4325153..4325899 (+)	747	WP_031588870.1	type II secretion system protein N	-
AAHZ17_RS21290 (AAHZ17_21250)	pilD	4325896..4326696 (+)	801	WP_004213441.1	A24 family peptidase	Machinery gene
AAHZ17_RS21295 (AAHZ17_21255)	hrpB	4326744..4329173 (-)	2430	WP_080792605.1	ATP-dependent helicase HrpB	-
AAHZ17_RS21300 (AAHZ17_21260)	thpR	4329246..4329782 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHZ17_RS21305 (AAHZ17_21265)	sfsA	4329782..4330498 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAHZ17_RS21310 (AAHZ17_21270)	dksA	4330661..4331116 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=991896 AAHZ17_RS21290 WP_004213441.1 4325896..4326696(+) (pilD) [Klebsiella pneumoniae strain Kpn5827]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991896 AAHZ17_RS21290 WP_004213441.1 4325896..4326696(+) (pilD) [Klebsiella pneumoniae strain Kpn5827]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGTATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCAGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425