Detailed information NTG0991873

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHZ44_RS21125
• Genome accession: NZ_CP153702
• Coordinates: 4265218..4266018 (+)
• Length: 266 a.a.
• NCBI ID: WP_040089576.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn1999
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4260218..4271018

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHZ44_RS21090 (AAHZ44_21065)	gspH	4260374..4260883 (+)	510	WP_080831502.1	type II secretion system minor pseudopilin GspH	-
AAHZ44_RS21095 (AAHZ44_21070)	gspI	4260886..4261251 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAHZ44_RS21100 (AAHZ44_21075)	gspJ	4261248..4261844 (+)	597	WP_023342989.1	type II secretion system minor pseudopilin GspJ	-
AAHZ44_RS21105 (AAHZ44_21080)	gspK	4261841..4262827 (+)	987	WP_080831503.1	type II secretion system minor pseudopilin GspK	-
AAHZ44_RS21110 (AAHZ44_21085)	gspL	4262814..4264007 (+)	1194	WP_040215352.1	type II secretion system protein GspL	-
AAHZ44_RS21115 (AAHZ44_21090)	-	4264000..4264485 (+)	486	WP_012737411.1	type II secretion system protein M	-
AAHZ44_RS21120 (AAHZ44_21095)	-	4264475..4265221 (+)	747	WP_040089575.1	type II secretion system protein N	-
AAHZ44_RS21125 (AAHZ44_21100)	pilD	4265218..4266018 (+)	801	WP_040089576.1	A24 family peptidase	Machinery gene
AAHZ44_RS21130 (AAHZ44_21105)	hrpB	4266066..4268495 (-)	2430	WP_064145607.1	ATP-dependent helicase HrpB	-
AAHZ44_RS21135 (AAHZ44_21110)	thpR	4268568..4269104 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHZ44_RS21140 (AAHZ44_21115)	sfsA	4269104..4269820 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAHZ44_RS21145 (AAHZ44_21120)	dksA	4269983..4270438 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29354.99 Da
• Isoelectric Point: 8.8894

>NTDB_id=991873 AAHZ44_RS21125 WP_040089576.1 4265218..4266018(+) (pilD) [Klebsiella pneumoniae strain Kpn1999]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991873 AAHZ44_RS21125 WP_040089576.1 4265218..4266018(+) (pilD) [Klebsiella pneumoniae strain Kpn1999]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGTCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425