Detailed information NTG0991825

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHY60_RS20565
• Genome accession: NZ_CP153698
• Coordinates: 4203175..4203975 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4198175..4208975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHY60_RS20530 (AAHY60_20495)	gspH	4198331..4198846 (+)	516	WP_032410836.1	type II secretion system minor pseudopilin GspH	-
AAHY60_RS20535 (AAHY60_20500)	gspI	4198843..4199208 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAHY60_RS20540 (AAHY60_20505)	gspJ	4199205..4199801 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
AAHY60_RS20545 (AAHY60_20510)	gspK	4199798..4200784 (+)	987	WP_077259617.1	type II secretion system minor pseudopilin GspK	-
AAHY60_RS20550 (AAHY60_20515)	gspL	4200771..4201964 (+)	1194	WP_049000301.1	type II secretion system protein GspL	-
AAHY60_RS20555 (AAHY60_20520)	-	4201957..4202442 (+)	486	WP_004151943.1	type II secretion system protein M	-
AAHY60_RS20560 (AAHY60_20525)	-	4202432..4203178 (+)	747	WP_004178605.1	type II secretion system protein N	-
AAHY60_RS20565 (AAHY60_20530)	pilD	4203175..4203975 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
AAHY60_RS20570 (AAHY60_20535)	hrpB	4204023..4206452 (-)	2430	WP_049000299.1	ATP-dependent helicase HrpB	-
AAHY60_RS20575 (AAHY60_20540)	thpR	4206525..4207061 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHY60_RS20580 (AAHY60_20545)	sfsA	4207061..4207777 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAHY60_RS20585 (AAHY60_20550)	dksA	4207940..4208395 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=991825 AAHY60_RS20565 WP_002888947.1 4203175..4203975(+) (pilD) [Klebsiella pneumoniae strain Kpn13]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991825 AAHY60_RS20565 WP_002888947.1 4203175..4203975(+) (pilD) [Klebsiella pneumoniae strain Kpn13]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425